PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_8	5	CH_cru_58	10	200	0.0000235365
Capsella rubella	scaffold_8	6	CH_cru_78	10	200	0.0000374738
Glycine max	Gm14	5	CH_gma_60	10	178	0.0000077175
Glycine max	Gm14	6	CH_gma_84	10	178	0.0000346299
Lotus japonicus	chr2	3	CH_lja_137	3	3	0.000132876
Lotus japonicus	chr2	9	CH_lja_9	3	3	0.0000866369
Thellungiella parvula	ch6-6	6	CH_tpa_23	12	299	0.0000215736
Theobroma cacao	scaffold_9	2	CH_tca_178	6	27	0.00000303798
Theobroma cacao	scaffold_9	3	CH_tca_237	6	27	0.00000505117

GO term	Description	Number of clusters
GO:0043086	negative regulation of catalytic activity	208
GO:0051444	negative regulation of ubiquitin-protein ligase activity	4
GO:2000117	negative regulation of cysteine-type endopeptidase activity	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V