Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0043412
- Description
- macromolecule modification
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 5 | 3 | CH_ath_464 | 25 | 74 | 0.000956711 |
Beta vulgaris | Bvchr9.sca025 | 3 | CH_bvu_304 | 17 | 51 | 0.000327459 |
Beta vulgaris | Bvchr9.sca025 | 6 | CH_bvu_49 | 17 | 51 | 0.000327459 |
Carica papaya | supercontig_27 | 1 | CH_cpa_29 | 10 | 11 | 0.00000000777706 |
Carica papaya | supercontig_27 | 2 | CH_cpa_39 | 10 | 11 | 0.000000046773 |
Carica papaya | supercontig_27 | 4 | CH_cpa_11 | 10 | 11 | 0.00000000777706 |
Carica papaya | supercontig_27 | 5 | CH_cpa_10 | 10 | 11 | 0.000000046773 |
Fragaria vesca | LG7 | 1 | CH_fve_160 | 7 | 8 | 0.0000386543 |
Fragaria vesca | LG7 | 2 | CH_fve_227 | 7 | 8 | 0.000131117 |
Solanum tuberosum | chr05 | 9 | CH_stu_24 | 8 | 12 | 0.000426745 |
Vitis vinifera | chr12 | 1 | CH_vvi_214 | 13 | 32 | 0.0000543739 |
Vitis vinifera | chr12 | 2 | CH_vvi_239 | 14 | 33 | 0.0000531263 |
Vitis vinifera | chr12 | 3 | CH_vvi_195 | 17 | 33 | 0.000000395581 |
Vitis vinifera | chr12 | 4 | CH_vvi_85 | 13 | 32 | 0.0000543739 |
Vitis vinifera | chr12 | 5 | CH_vvi_86 | 14 | 33 | 0.0000531263 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | 6 |
GO:0000154 | rRNA modification | 42 |
GO:0001510 | RNA methylation | 1 |
GO:0002098 | tRNA wobble uridine modification | 1 |
GO:0006306 | DNA methylation | 5 |
GO:0006464 | cellular protein modification process | 69 |
GO:0006468 | protein phosphorylation | 374 |
GO:0006470 | protein dephosphorylation | 3 |
GO:0006471 | protein ADP-ribosylation | 9 |
GO:0006486 | protein glycosylation | 5 |
GO:0006499 | N-terminal protein myristoylation | 4 |
GO:0006517 | protein deglycosylation | 14 |
GO:0008213 | protein alkylation | 1 |
GO:0008612 | peptidyl-lysine modification to hypusine | 3 |
GO:0008616 | queuosine biosynthetic process | 8 |
GO:0010424 | DNA methylation on cytosine within a CG sequence | 4 |
GO:0010452 | histone H3-K36 methylation | 2 |
GO:0010731 | protein glutathionylation | 16 |
GO:0016255 | attachment of GPI anchor to protein | 38 |
GO:0016556 | mRNA modification | 2 |
GO:0016567 | protein ubiquitination | 32 |
GO:0016572 | histone phosphorylation | 3 |
GO:0016575 | histone deacetylation | 1 |
GO:0016579 | protein deubiquitination | 1 |
GO:0016598 | protein arginylation | 3 |
GO:0017182 | peptidyl-diphthamide metabolic process | 3 |
GO:0017186 | peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase | 2 |
GO:0018023 | peptidyl-lysine trimethylation | 3 |
GO:0018149 | peptide cross-linking | 25 |
GO:0018279 | protein N-linked glycosylation via asparagine | 2 |
GO:0018282 | metal incorporation into metallo-sulfur cluster | 2 |
GO:0018298 | protein-chromophore linkage | 5 |
GO:0018343 | protein farnesylation | 6 |
GO:0031167 | rRNA methylation | 5 |
GO:0031365 | N-terminal protein amino acid modification | 6 |
GO:0034227 | tRNA thio-modification | 4 |
GO:0034968 | histone lysine methylation | 1 |
GO:0035067 | negative regulation of histone acetylation | 8 |
GO:0035335 | peptidyl-tyrosine dephosphorylation | 2 |
GO:0043967 | histone H4 acetylation | 6 |
GO:0043968 | histone H2A acetylation | 4 |
GO:0044030 | regulation of DNA methylation | 11 |
GO:0045116 | protein neddylation | 4 |
GO:0051444 | negative regulation of ubiquitin-protein ligase activity | 4 |
GO:0070526 | threonylcarbamoyladenosine biosynthetic process | 2 |
GO:0070647 | protein modification by small protein conjugation or removal | 1 |
GO:0070734 | histone H3-K27 methylation | 4 |
GO:0070932 | histone H3 deacetylation | 1 |
GO:0071900 | regulation of protein serine/threonine kinase activity | 2 |
GO:0080156 | mitochondrial mRNA modification | 2 |
GO:0090042 | tubulin deacetylation | 2 |
GO:1900865 | chloroplast RNA modification | 1 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |