Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0043169
- Description
- cation binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Carica papaya | supercontig_33 | 4 | CH_cpa_12 | 13 | 16 | 0.000000108569 |
Carica papaya | supercontig_33 | 5 | CH_cpa_12 | 13 | 16 | 0.000000295141 |
Carica papaya | supercontig_33 | 6 | CH_cpa_25 | 13 | 16 | 0.00000325094 |
Solanum tuberosum | chr11 | 3 | CH_stu_401 | 16 | 22 | 0.00000114697 |
Solanum tuberosum | chr11 | 6 | CH_stu_145 | 16 | 22 | 0.00000114697 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000287 | magnesium ion binding | 8 |
GO:0005506 | iron ion binding | 600 |
GO:0005507 | copper ion binding | 113 |
GO:0005509 | calcium ion binding | 144 |
GO:0008198 | ferrous iron binding | 24 |
GO:0008199 | ferric iron binding | 2 |
GO:0008270 | zinc ion binding | 175 |
GO:0016151 | nickel cation binding | 10 |
GO:0016208 | AMP binding | 3 |
GO:0016531 | copper chaperone activity | 1 |
GO:0030145 | manganese ion binding | 274 |
GO:0030151 | molybdenum ion binding | 9 |
GO:0030955 | potassium ion binding | 2 |
GO:0030976 | thiamine pyrophosphate binding | 15 |
GO:0032791 | lead ion binding | 2 |
GO:0046872 | metal ion binding | 78 |
GO:0046914 | transition metal ion binding | 78 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |