PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0043086
Description: negative regulation of catalytic activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00017	3	CH_atr_5	22	33	8.5128e-41
Amborella trichopoda	scaffold00040	3	CH_atr_112	6	11	0.0000000753446
Amborella trichopoda	scaffold00044	3	CH_atr_74	9	36	0.00000000101112
Amborella trichopoda	scaffold00069	3	CH_atr_9	21	41	3.18664e-35
Amborella trichopoda	scaffold00122	3	CH_atr_220	4	5	0.0000458416
Amborella trichopoda	scaffold00017	6	CH_atr_6	22	33	8.5128e-41
Amborella trichopoda	scaffold00069	6	CH_atr_9	21	41	3.18664e-35
Arabidopsis lyrata	scaffold_1	1	CH_aly_113	4	5	0.00000183847
Arabidopsis lyrata	scaffold_6	1	CH_aly_88	4	4	0.000000368227
Arabidopsis lyrata	scaffold_7	1	CH_aly_187	3	3	0.000204624
Arabidopsis lyrata	scaffold_8	1	CH_aly_24	10	55	0.000000000000241714
Arabidopsis lyrata	scaffold_1	2	CH_aly_169	4	5	0.0000065906
Arabidopsis lyrata	scaffold_6	2	CH_aly_141	4	4	0.00000132076
Arabidopsis lyrata	scaffold_7	2	CH_aly_304	3	3	0.000529559
Arabidopsis lyrata	scaffold_8	2	CH_aly_39	10	55	0.00000000000645257
Arabidopsis lyrata	scaffold_1	3	CH_aly_91	5	5	0.00000000852578
Arabidopsis lyrata	scaffold_6	3	CH_aly_177	4	4	0.00000284258
Arabidopsis lyrata	scaffold_7	3	CH_aly_396	3	3	0.000937905
Arabidopsis lyrata	scaffold_8	3	CH_aly_41	11	55	0.000000000000534857
Arabidopsis lyrata	scaffold_8	4	CH_aly_6	10	55	0.000000000000241714
Arabidopsis lyrata	scaffold_8	5	CH_aly_18	10	55	0.00000000000645257
Arabidopsis lyrata	scaffold_8	6	CH_aly_17	11	55	0.000000000000534857
Beta vulgaris	Bvchr1_un.sca002	1	CH_bvu_146	3	3	0.0000915457
Beta vulgaris	Bvchr1_un.sca002	2	CH_bvu_218	3	3	0.000172615
Beta vulgaris	Bvchr1_un.sca002	3	CH_bvu_274	3	3	0.000226801
Beta vulgaris	Bvchr7.sca021	3	CH_bvu_75	5	6	0.0000000059927
Brassica rapa	A03	1	CH_bra_148	4	13	0.000164721
Brassica rapa	A09	1	CH_bra_172	3	4	0.000614839
Brassica rapa	A03	2	CH_bra_298	4	13	0.000892973
Brassica rapa	A02	3	CH_bra_60	5	5	0.00000000582879
Capsella rubella	scaffold_1	1	CH_cru_185	3	3	0.000193119
Capsella rubella	scaffold_6	1	CH_cru_19	7	8	0.0000000000000166456
Capsella rubella	scaffold_8	1	CH_cru_71	7	37	0.0000000204846
Capsella rubella	scaffold_6	2	CH_cru_35	7	8	0.000000000000183163
Capsella rubella	scaffold_8	2	CH_cru_128	7	37	0.000000221076
Capsella rubella	scaffold_8	3	CH_cru_157	7	37	0.000000326776
Carica papaya	supercontig_29	1	CH_cpa_125	3	3	0.000150714
Carica papaya	supercontig_29	2	CH_cpa_190	3	3	0.000331203
Carica papaya	supercontig_18	3	CH_cpa_41	5	5	0.00000000468423
Carica papaya	supercontig_29	3	CH_cpa_303	3	3	0.000561444
Carica papaya	supercontig_81	3	CH_cpa_3	13	14	1.56322e-28
Carica papaya	supercontig_81	6	CH_cpa_3	13	14	1.56322e-28
Citrullus lanatus	Chr7	1	CH_cla_71	4	4	0.00000018735
Citrullus lanatus	Chr9	1	CH_cla_141	3	3	0.000115842
Citrullus lanatus	Chr7	2	CH_cla_87	4	4	0.000000462317
Citrullus lanatus	Chr9	2	CH_cla_172	3	3	0.000226304
Citrullus lanatus	Chr10	3	CH_cla_24	8	10	0.00000000000000154578
Citrullus lanatus	Chr7	3	CH_cla_75	5	5	0.00000000254765
Citrullus lanatus	Chr7	3	CH_cla_231	4	10	0.000214114
Citrullus lanatus	Chr9	3	CH_cla_270	3	3	0.000410988
Citrus sinensis	scaffold00013	3	CH_csi_62	5	6	0.0000000522594
Citrus sinensis	scaffold00026	3	CH_csi_36	6	6	0.0000000000288365
Citrus sinensis	scaffold00040	3	CH_csi_253	3	3	0.000760963
Cucumis melo	CM3.5_scaffold00005	1	CH_cme_203	3	5	0.000934827
Cucumis melo	CM3.5_scaffold00021	3	CH_cme_96	6	15	0.000000029007
Cucumis melo	CM3.5_scaffold00033	3	CH_cme_192	4	7	0.0000358877
Cucumis melo	CM3.5_scaffold00063	3	CH_cme_13	12	22	4.71046e-22
Cucumis melo	CM3.5_scaffold00063	6	CH_cme_11	12	22	4.71046e-22
Eucalyptus grandis	scaffold_10	1	CH_egr_623	3	4	0.000935962
Eucalyptus grandis	scaffold_6	1	CH_egr_438	4	7	0.0000150279
Eucalyptus grandis	scaffold_6	1	CH_egr_338	4	4	0.000000431278
Eucalyptus grandis	scaffold_7	1	CH_egr_135	7	9	0.000000000000087597
Eucalyptus grandis	scaffold_6	2	CH_egr_562	4	7	0.0000346545
Eucalyptus grandis	scaffold_6	2	CH_egr_457	4	4	0.00000099558
Eucalyptus grandis	scaffold_7	2	CH_egr_184	7	9	0.000000000000390811
Eucalyptus grandis	scaffold_6	3	CH_egr_531	4	4	0.00000121163
Eucalyptus grandis	scaffold_6	3	CH_egr_647	4	7	0.0000421629
Eucalyptus grandis	scaffold_7	3	CH_egr_215	7	9	0.000000000000554636
Fragaria vesca	LG2	1	CH_fve_65	5	7	0.00000000579706
Fragaria vesca	LG5	1	CH_fve_102	4	5	0.000000941948
Fragaria vesca	scf0512956	1	CH_fve_243	3	4	0.000503388
Fragaria vesca	LG2	2	CH_fve_86	5	7	0.000000021042
Fragaria vesca	LG5	2	CH_fve_132	4	5	0.00000261874
Fragaria vesca	LG2	3	CH_fve_124	5	7	0.000000045469
Fragaria vesca	LG5	3	CH_fve_92	5	5	0.00000000217334
Glycine max	Gm14	1	CH_gma_76	5	5	0.00000000149447
Glycine max	Gm14	2	CH_gma_105	5	5	0.00000000402396
Glycine max	Gm04	3	CH_gma_136	5	5	0.0000000101449
Glycine max	Gm14	3	CH_gma_135	5	5	0.0000000101449
Glycine max	Gm16	3	CH_gma_319	4	5	0.0000179967
Gossypium raimondii	Chr08	1	CH_gra_210	3	3	0.000154112
Gossypium raimondii	Chr11	1	CH_gra_49	6	6	0.000000000000544085
Gossypium raimondii	Chr08	2	CH_gra_315	3	3	0.000438227
Gossypium raimondii	Chr11	2	CH_gra_55	6	6	0.00000000000460698
Gossypium raimondii	Chr08	3	CH_gra_403	3	3	0.000573986
Gossypium raimondii	Chr09	3	CH_gra_402	3	3	0.000573986
Gossypium raimondii	Chr10	3	CH_gra_120	5	5	0.00000000335532
Gossypium raimondii	Chr11	3	CH_gra_80	6	6	0.00000000000797839
Malus domestica	10	3	CH_mdo_168	6	35	0.0000163061
Malus domestica	11	3	CH_mdo_392	3	3	0.000708916
Malus domestica	14	3	CH_mdo_34	6	9	0.000000000891256
Malus domestica	15	3	CH_mdo_176	4	7	0.0000264006
Malus domestica	2	3	CH_mdo_391	3	3	0.000708916
Manihot esculenta	scaffold03942	1	CH_mes_187	3	4	0.000994196
Manihot esculenta	scaffold04024	1	CH_mes_130	3	3	0.000248968
Manihot esculenta	scaffold06908	1	CH_mes_30	5	5	0.00000000116093
Manihot esculenta	scaffold07088	1	CH_mes_72	5	15	0.00000342445
Manihot esculenta	scaffold10292	1	CH_mes_129	3	3	0.000248968
Manihot esculenta	scaffold04024	2	CH_mes_196	3	3	0.000416965
Manihot esculenta	scaffold06908	2	CH_mes_34	5	5	0.00000000278964
Manihot esculenta	scaffold07088	2	CH_mes_88	5	15	0.00000819943
Manihot esculenta	scaffold10292	2	CH_mes_195	3	3	0.000416965
Manihot esculenta	scaffold03942	3	CH_mes_102	4	4	0.00000152812
Manihot esculenta	scaffold04024	3	CH_mes_255	3	3	0.000536625
Manihot esculenta	scaffold06908	3	CH_mes_47	5	5	0.00000000427923
Manihot esculenta	scaffold07088	3	CH_mes_126	5	15	0.0000125528
Manihot esculenta	scaffold10292	3	CH_mes_254	3	3	0.000536625
Medicago truncatula	chr4	1	CH_mtr_129	6	10	0.000000000104076
Medicago truncatula	chr7	1	CH_mtr_226	6	26	0.00000011198
Medicago truncatula	chr8	1	CH_mtr_323	4	6	0.00000395362
Medicago truncatula	chr4	2	CH_mtr_159	6	10	0.000000000273547
Medicago truncatula	chr7	2	CH_mtr_289	6	26	0.000000293333
Medicago truncatula	chr8	2	CH_mtr_384	4	6	0.00000748189
Medicago truncatula	chr3	3	CH_mtr_774	5	28	0.000395507
Medicago truncatula	chr4	3	CH_mtr_229	6	10	0.00000000197527
Medicago truncatula	chr5	3	CH_mtr_65	10	20	4.14486e-17
Medicago truncatula	chr8	3	CH_mtr_535	4	6	0.0000276716
Medicago truncatula	chr5	6	CH_mtr_57	10	20	4.14486e-17
Oryza sativa ssp. japonica	1	1	CH_osa_137	4	4	0.0000000982315
Oryza sativa ssp. japonica	1	2	CH_osa_143	4	4	0.000000194417
Oryza sativa ssp. japonica	1	3	CH_osa_174	4	4	0.000000415636
Oryza sativa ssp. japonica	2	3	CH_osa_195	5	14	0.00000132012
Oryza sativa ssp. japonica	2	3	CH_osa_158	6	23	0.000000104533
Populus trichocarpa	Chr01	1	CH_ptr_302	3	3	0.000231398
Populus trichocarpa	Chr03	1	CH_ptr_375	3	4	0.000924357
Populus trichocarpa	Chr07	1	CH_ptr_301	3	3	0.000231398
Populus trichocarpa	Chr10	1	CH_ptr_162	4	4	0.000000403362
Populus trichocarpa	Chr11	1	CH_ptr_161	4	4	0.000000403362
Populus trichocarpa	Chr11	1	CH_ptr_374	3	4	0.000924357
Populus trichocarpa	Chr14	1	CH_ptr_300	3	3	0.000231398
Populus trichocarpa	Chr01	2	CH_ptr_404	3	3	0.000467215
Populus trichocarpa	Chr07	2	CH_ptr_236	4	5	0.00000516824
Populus trichocarpa	Chr10	2	CH_ptr_205	4	4	0.00000103549
Populus trichocarpa	Chr11	2	CH_ptr_204	4	4	0.00000103549
Populus trichocarpa	Chr14	2	CH_ptr_403	3	3	0.000467215
Populus trichocarpa	Chr01	3	CH_ptr_283	4	4	0.00000213949
Populus trichocarpa	Chr01	3	CH_ptr_560	3	3	0.000802949
Populus trichocarpa	Chr07	3	CH_ptr_328	4	5	0.0000106746
Populus trichocarpa	Chr10	3	CH_ptr_282	4	4	0.00000213949
Populus trichocarpa	Chr11	3	CH_ptr_281	4	4	0.00000213949
Populus trichocarpa	Chr14	3	CH_ptr_559	3	3	0.000802949
Prunus persica	scaffold_1	1	CH_ppe_165	4	4	0.000000669431
Prunus persica	scaffold_2	1	CH_ppe_164	4	4	0.000000669431
Prunus persica	scaffold_5	1	CH_ppe_166	4	4	0.000000669431
Prunus persica	scaffold_6	1	CH_ppe_295	3	3	0.000309534
Prunus persica	scaffold_1	2	CH_ppe_200	4	4	0.00000136597
Prunus persica	scaffold_2	2	CH_ppe_199	4	4	0.00000136597
Prunus persica	scaffold_5	2	CH_ppe_201	4	4	0.00000136597
Prunus persica	scaffold_6	2	CH_ppe_398	3	3	0.000526335
Prunus persica	scaffold_1	3	CH_ppe_244	4	4	0.00000177744
Prunus persica	scaffold_2	3	CH_ppe_243	4	4	0.00000177744
Prunus persica	scaffold_5	3	CH_ppe_24	11	14	5.60219e-22
Prunus persica	scaffold_5	3	CH_ppe_245	4	4	0.00000177744
Prunus persica	scaffold_6	3	CH_ppe_500	3	3	0.00064041
Prunus persica	scaffold_5	6	CH_ppe_20	11	14	5.60219e-22
Ricinus communis	30190	1	CH_rco_13	8	14	0.0000000000000177929
Ricinus communis	29751	3	CH_rco_56	6	7	0.000000000313612
Ricinus communis	29836	3	CH_rco_217	4	7	0.000126481
Ricinus communis	30115	3	CH_rco_75	5	5	0.0000000128879
Ricinus communis	30143	3	CH_rco_74	5	5	0.0000000128879
Ricinus communis	30170	3	CH_rco_154	4	4	0.00000364512
Ricinus communis	30190	3	CH_rco_15	12	35	4.64357e-17
Ricinus communis	30190	6	CH_rco_10	12	35	4.64357e-17
Solanum lycopersicum	ch04	1	CH_sly_200	4	4	0.00000126127
Solanum lycopersicum	ch04	2	CH_sly_220	4	4	0.00000222191
Solanum lycopersicum	ch02	3	CH_sly_169	6	10	0.0000000100823
Solanum lycopersicum	ch04	3	CH_sly_300	4	4	0.00000449951
Solanum lycopersicum	ch08	3	CH_sly_5	17	18	2.19686e-37
Solanum lycopersicum	ch08	3	CH_sly_60	9	11	8.81031e-17
Solanum lycopersicum	ch10	3	CH_sly_301	4	4	0.00000449951
Solanum lycopersicum	ch08	6	CH_sly_5	17	18	2.19686e-37
Solanum tuberosum	chr02	1	CH_stu_306	4	5	0.0000087939
Solanum tuberosum	chr02	2	CH_stu_349	4	5	0.0000165374
Solanum tuberosum	chr04	3	CH_stu_471	4	4	0.0000106244
Solanum tuberosum	chr07	3	CH_stu_457	5	9	0.00000541305
Solanum tuberosum	chr08	3	CH_stu_43	20	77	3.44256e-26
Solanum tuberosum	chr08	3	CH_stu_45	12	12	6.95775e-25
Solanum tuberosum	chr10	3	CH_stu_218	6	6	0.000000000177309
Solanum tuberosum	chr10	3	CH_stu_316	5	5	0.0000000435536
Solanum tuberosum	chr08	6	CH_stu_45	12	12	6.95775e-25
Solanum tuberosum	chr08	6	CH_stu_43	20	77	3.44256e-26
Solanum tuberosum	chr10	6	CH_stu_196	10	174	0.000135359
Thellungiella parvula	ch6-6	1	CH_tpa_57	6	39	0.00000309713
Thellungiella parvula	ch6-6	3	CH_tpa_91	7	39	0.000000744204
Theobroma cacao	scaffold_1	1	CH_tca_67	5	5	0.000000000742359
Theobroma cacao	scaffold_8	1	CH_tca_161	4	5	0.00000201336
Theobroma cacao	scaffold_9	1	CH_tca_179	4	6	0.00000603098
Theobroma cacao	scaffold_1	2	CH_tca_73	5	5	0.0000000022668
Theobroma cacao	scaffold_8	2	CH_tca_187	4	5	0.00000488023
Theobroma cacao	scaffold_1	3	CH_tca_103	5	5	0.00000000365136
Theobroma cacao	scaffold_10r	3	CH_tca_35	8	9	5.05317e-16
Theobroma cacao	scaffold_3	3	CH_tca_412	3	3	0.000551272
Theobroma cacao	scaffold_8	3	CH_tca_245	4	5	0.00000712598
Vitis vinifera	chr13	1	CH_vvi_19	12	15	5.90972e-25
Vitis vinifera	chr15	1	CH_vvi_87	6	9	0.000000000647498
Vitis vinifera	chr3	1	CH_vvi_287	3	3	0.000484976
Vitis vinifera	chr15	2	CH_vvi_99	6	9	0.00000000158141
Vitis vinifera	chr13	3	CH_vvi_23	13	15	5.57589e-26
Vitis vinifera	chr15	3	CH_vvi_135	6	9	0.00000000644433
Vitis vinifera	chr16	3	CH_vvi_194	6	15	0.000000376742
Vitis vinifera	chr2	3	CH_vvi_261	4	4	0.00000564358
Vitis vinifera	chr6	3	CH_vvi_260	4	4	0.00000564358
Vitis vinifera	chrUn	3	CH_vvi_177	5	6	0.000000125686
Vitis vinifera	chr13	4	CH_vvi_18	12	15	5.90972e-25
Vitis vinifera	chr13	6	CH_vvi_25	13	15	5.57589e-26
Zea mays	7	1	CH_zma_162	3	3	0.000117067
Zea mays	7	2	CH_zma_197	3	3	0.000245941
Zea mays	7	3	CH_zma_281	3	3	0.000335995

Available child term results

GO term	Description	Number of clusters
GO:0051444	negative regulation of ubiquitin-protein ligase activity	4
GO:2000117	negative regulation of cysteine-type endopeptidase activity	2

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V