PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrus sinensis	scaffold00073	3	CH_csi_231	4	4	0.0005773
Cucumis melo	CM3.5_scaffold00006	1	CH_cme_190	4	5	0.000646405
Cucumis melo	CM3.5_scaffold00006	2	CH_cme_257	4	5	0.000841666
Cucumis melo	CM3.5_scaffold00016	3	CH_cme_255	5	7	0.000139174
Gossypium raimondii	Chr07	1	CH_gra_207	10	76	0.000131355
Gossypium raimondii	Chr07	2	CH_gra_275	10	76	0.00020827
Gossypium raimondii	Chr07	3	CH_gra_404	10	76	0.000612468
Thellungiella parvula	ch1-1	1	CH_tpa_69	7	19	0.00000872372
Thellungiella parvula	ch1-1	2	CH_tpa_96	7	19	0.0000132069
Thellungiella parvula	ch1-1	3	CH_tpa_122	7	19	0.00002503

GO term	Description	Number of clusters
GO:0003689	DNA clamp loader activity	5
GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	6
GO:0004003	ATP-dependent DNA helicase activity	4
GO:0004004	ATP-dependent RNA helicase activity	2
GO:0004008	copper-exporting ATPase activity	1
GO:0004012	phospholipid-translocating ATPase activity	20
GO:0004176	ATP-dependent peptidase activity	8
GO:0005388	calcium-transporting ATPase activity	31
GO:0008026	ATP-dependent helicase activity	20
GO:0008094	DNA-dependent ATPase activity	3
GO:0008551	cadmium-exporting ATPase activity	3
GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	10
GO:0008559	xenobiotic-transporting ATPase activity	6
GO:0015415	phosphate ion transmembrane-transporting ATPase activity	5
GO:0015446	arsenite-transmembrane transporting ATPase activity	16
GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6
GO:0019829	cation-transporting ATPase activity	17
GO:0042626	ATPase activity, coupled to transmembrane movement of substances	94
GO:0043141	ATP-dependent 5'-3' DNA helicase activity	14
GO:0043142	single-stranded DNA-dependent ATPase activity	7
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0046961	proton-transporting ATPase activity, rotational mechanism	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V