PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	3	CH_aly_225	4	9	0.0000322365
Brassica rapa	A06	3	CH_bra_265	3	3	0.000229724
Carica papaya	supercontig_70	3	CH_cpa_150	3	3	0.0000217729
Glycine max	Gm16	3	CH_gma_434	3	3	0.00024125
Lotus japonicus	chr2	1	CH_lja_54	3	4	0.00000775343
Medicago truncatula	chr7	1	CH_mtr_387	4	22	0.0000370531
Medicago truncatula	chr7	2	CH_mtr_571	4	22	0.000213636
Oryza sativa ssp. japonica	8	1	CH_osa_118	4	5	0.0000000119559
Oryza sativa ssp. japonica	8	2	CH_osa_134	4	5	0.000000068976
Solanum lycopersicum	ch03	1	CH_sly_82	6	8	0.0000000000158159
Solanum lycopersicum	ch03	2	CH_sly_87	6	8	0.0000000000664692
Solanum tuberosum	chr05	3	CH_stu_586	3	3	0.000107448
Zea mays	10	2	CH_zma_242	4	19	0.000758471

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V