PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0033554
Description: cellular response to stress

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Glycine max	Gm10	2	CH_gma_417	5	5	0.000504241
Glycine max	Gm10	3	CH_gma_565	5	5	0.000793242
Glycine max	Gm10	4	CH_gma_67	18	291	0.000127317

Available child term results

GO term	Description	Number of clusters
GO:0000012	single strand break repair	2
GO:0000045	autophagic vacuole assembly	2
GO:0000077	DNA damage checkpoint	2
GO:0000724	double-strand break repair via homologous recombination	9
GO:0006281	DNA repair	5
GO:0006282	regulation of DNA repair	5
GO:0006284	base-excision repair	8
GO:0006294	nucleotide-excision repair, preincision complex assembly	2
GO:0006298	mismatch repair	7
GO:0006302	double-strand break repair	1
GO:0006303	double-strand break repair via nonhomologous end joining	12
GO:0006983	ER overload response	2
GO:0009432	SOS response	6
GO:0009626	plant-type hypersensitive response	18
GO:0009970	cellular response to sulfate starvation	12
GO:0010106	cellular response to iron ion starvation	14
GO:0010343	singlet oxygen-mediated programmed cell death	2
GO:0010438	cellular response to sulfur starvation	6
GO:0016036	cellular response to phosphate starvation	6
GO:0034052	positive regulation of plant-type hypersensitive response	2
GO:0034263	autophagy in response to ER overload	1
GO:0034605	cellular response to heat	2
GO:0034614	cellular response to reactive oxygen species	2
GO:0042631	cellular response to water deprivation	1
GO:0043247	telomere maintenance in response to DNA damage	8
GO:0045739	positive regulation of DNA repair	2
GO:0051103	DNA ligation involved in DNA repair	11
GO:0051365	cellular response to potassium ion starvation	2
GO:0070370	cellular heat acclimation	1
GO:0071456	cellular response to hypoxia	26
GO:0071472	cellular response to salt stress	2
GO:0071475	cellular hyperosmotic salinity response	13
GO:0071732	cellular response to nitric oxide	1
GO:0072732	cellular response to calcium ion starvation	2
GO:1900409	positive regulation of cellular response to oxidative stress	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V