PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_8	5	CH_egr_169	14	82	0.0000000266685
Eucalyptus grandis	scaffold_8	6	CH_egr_200	14	82	0.0000000396698
Glycine max	Gm08	6	CH_gma_63	10	34	0.000000352907

GO term	Description	Number of clusters
GO:0001561	fatty acid alpha-oxidation	13
GO:0006083	acetate metabolic process	2
GO:0006086	acetyl-CoA biosynthetic process from pyruvate	3
GO:0006097	glyoxylate cycle	3
GO:0006631	fatty acid metabolic process	8
GO:0006633	fatty acid biosynthetic process	40
GO:0006635	fatty acid beta-oxidation	3
GO:0006636	unsaturated fatty acid biosynthetic process	3
GO:0009696	salicylic acid metabolic process	2
GO:0009697	salicylic acid biosynthetic process	42
GO:0010322	regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2
GO:0010430	fatty acid omega-oxidation	4
GO:0010597	green leaf volatile biosynthetic process	32
GO:0018874	benzoate metabolic process	4
GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	9
GO:0019370	leukotriene biosynthetic process	7
GO:0019450	L-cysteine catabolic process to pyruvate	6
GO:0019605	butyrate metabolic process	6
GO:0019632	shikimate metabolic process	2
GO:0030418	nicotianamine biosynthetic process	11
GO:0030497	fatty acid elongation	4
GO:0031408	oxylipin biosynthetic process	12
GO:0033473	indoleacetic acid conjugate metabolic process	2
GO:0033587	shikimate biosynthetic process	4
GO:0042318	penicillin biosynthetic process	2
GO:0046345	abscisic acid catabolic process	28
GO:0046459	short-chain fatty acid metabolic process	2
GO:0051791	medium-chain fatty acid metabolic process	4
GO:0080142	regulation of salicylic acid biosynthetic process	7
GO:0090359	negative regulation of abscisic acid biosynthetic process	6

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V