PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00061	1	CH_atr_178	2	2	0.000237107
Amborella trichopoda	scaffold00061	2	CH_atr_190	2	2	0.000237107
Amborella trichopoda	scaffold00040	3	CH_atr_346	2	2	0.000790358
Amborella trichopoda	scaffold00061	3	CH_atr_345	2	2	0.000790358
Amborella trichopoda	scaffold00040	9	CH_atr_9	2	2	0.000259583
Carica papaya	supercontig_10	1	CH_cpa_176	2	3	0.000873673
Carica papaya	supercontig_10	2	CH_cpa_224	2	3	0.000873673
Carica papaya	supercontig_10	3	CH_cpa_339	2	3	0.000873673
Citrullus lanatus	Chr3	3	CH_cla_240	2	2	0.000255341

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V