PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0032559
Description: adenyl ribonucleotide binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00085	1	CH_atr_95	16	35	0.000000640809
Amborella trichopoda	scaffold00085	2	CH_atr_99	16	35	0.000000953934
Amborella trichopoda	scaffold00085	3	CH_atr_111	19	37	0.0000000706092
Amborella trichopoda	scaffold00085	4	CH_atr_34	16	35	0.000000640809
Amborella trichopoda	scaffold00056	5	CH_atr_30	34	148	0.000000238061
Amborella trichopoda	scaffold00085	5	CH_atr_33	16	35	0.000000953934
Amborella trichopoda	scaffold00056	6	CH_atr_29	49	161	0.000000000000417671
Amborella trichopoda	scaffold00085	6	CH_atr_47	19	37	0.0000000706092
Eucalyptus grandis	scaffold_7	3	CH_egr_646	22	40	0.0000421314
Eucalyptus grandis	scaffold_8	3	CH_egr_704	28	62	0.0000913497
Eucalyptus grandis	scaffold_5	4	CH_egr_63	63	138	2.70576e-19
Eucalyptus grandis	scaffold_6	4	CH_egr_79	67	169	1.57946e-16
Eucalyptus grandis	scaffold_8	4	CH_egr_189	34	90	0.00000337228
Eucalyptus grandis	scaffold_6	5	CH_egr_87	67	169	3.41231e-16
Eucalyptus grandis	scaffold_8	5	CH_egr_215	34	90	0.00000494729
Eucalyptus grandis	scaffold_5	6	CH_egr_23	86	140	3.79112e-34
Eucalyptus grandis	scaffold_6	6	CH_egr_55	83	169	2.57271e-23
Eucalyptus grandis	scaffold_8	6	CH_egr_271	36	90	0.0000330271
Fragaria vesca	LG1	1	CH_fve_56	14	18	0.00000000108198
Fragaria vesca	LG1	2	CH_fve_66	14	18	0.00000000148012
Fragaria vesca	LG1	4	CH_fve_17	14	18	0.00000000108198
Fragaria vesca	LG1	5	CH_fve_18	14	18	0.00000000148012
Glycine max	Gm03	3	CH_gma_504	16	31	0.000453538
Gossypium raimondii	Chr09	3	CH_gra_48	30	46	0.00000000000000288088
Gossypium raimondii	Chr07	6	CH_gra_75	16	27	0.0000103759
Malus domestica	9	3	CH_mdo_369	14	30	0.000617754
Malus domestica	5	6	CH_mdo_30	11	14	0.00000865852
Manihot esculenta	scaffold11897	4	CH_mes_14	13	21	0.0000171123
Manihot esculenta	scaffold11897	5	CH_mes_12	13	21	0.00002367
Medicago truncatula	chr3	1	CH_mtr_568	19	75	0.000803022
Medicago truncatula	chr2	3	CH_mtr_459	12	17	0.00000610191
Medicago truncatula	chr3	3	CH_mtr_485	24	73	0.0000101929
Medicago truncatula	chr3	3	CH_mtr_200	30	78	0.000000000440743
Medicago truncatula	chr2	6	CH_mtr_174	12	17	0.00000610191
Medicago truncatula	chr6	6	CH_mtr_167	55	292	0.00000465833
Medicago truncatula	chr7	6	CH_mtr_230	10	14	0.000202038
Oryza sativa ssp. japonica	11	1	CH_osa_120	25	78	0.0000000158165
Oryza sativa ssp. japonica	11	2	CH_osa_121	25	78	0.0000000221166
Oryza sativa ssp. japonica	11	3	CH_osa_155	26	78	0.0000000863688
Oryza sativa ssp. japonica	11	4	CH_osa_9	70	246	3.97719e-26
Oryza sativa ssp. japonica	11	5	CH_osa_9	70	246	9.96638e-26
Oryza sativa ssp. japonica	11	6	CH_osa_10	76	246	1.52566e-26
Populus trichocarpa	Chr05	3	CH_ptr_220	15	18	0.0000000943789
Populus trichocarpa	Chr17	3	CH_ptr_400	9	9	0.0000925634
Populus trichocarpa	Chr05	6	CH_ptr_90	15	18	0.0000000943789
Populus trichocarpa	Chr17	6	CH_ptr_141	12	17	0.000442654
Ricinus communis	30146	3	CH_rco_169	27	75	0.000012898
Ricinus communis	30146	4	CH_rco_36	36	168	0.000963212
Ricinus communis	30146	5	CH_rco_37	37	168	0.000508341
Solanum lycopersicum	ch05	1	CH_sly_392	7	7	0.000494387
Solanum lycopersicum	ch05	2	CH_sly_451	7	7	0.000547897
Solanum lycopersicum	ch02	3	CH_sly_238	19	34	0.000000468004
Solanum lycopersicum	ch05	3	CH_sly_499	8	8	0.000209909
Solanum lycopersicum	ch02	6	CH_sly_88	19	34	0.000000468004
Solanum tuberosum	chr05	1	CH_stu_256	11	12	0.000000809217
Solanum tuberosum	chr05	2	CH_stu_275	11	12	0.000000980278
Solanum tuberosum	chr05	3	CH_stu_469	20	37	0.00000988439
Solanum tuberosum	chr08	3	CH_stu_423	30	73	0.00000284116
Solanum tuberosum	chr05	4	CH_stu_106	11	12	0.000000809217
Solanum tuberosum	chr05	5	CH_stu_108	11	12	0.000000980278
Solanum tuberosum	chr05	6	CH_stu_166	20	37	0.00000988439
Theobroma cacao	scaffold_5	1	CH_tca_125	25	69	0.000000320325
Theobroma cacao	scaffold_5	2	CH_tca_107	26	69	0.000000069139
Theobroma cacao	scaffold_5	3	CH_tca_99	30	69	0.000000000712747
Theobroma cacao	scaffold_5	4	CH_tca_47	25	69	0.000000320325
Theobroma cacao	scaffold_5	5	CH_tca_42	26	69	0.000000069139
Theobroma cacao	scaffold_1	6	CH_tca_124	11	17	0.000582523
Theobroma cacao	scaffold_7	6	CH_tca_9	104	294	4.03356e-32
Vitis vinifera	chr12	3	CH_vvi_213	30	73	0.00000089821
Vitis vinifera	chrUn	3	CH_vvi_442	9	10	0.000548446
Vitis vinifera	chr12	4	CH_vvi_97	56	297	0.000285857
Vitis vinifera	chr9	4	CH_vvi_36	69	257	0.000000000000063407
Vitis vinifera	chr12	5	CH_vvi_102	56	297	0.000534528
Vitis vinifera	chr9	5	CH_vvi_34	70	257	0.0000000000000404395
Vitis vinifera	chr12	6	CH_vvi_60	83	299	0.0000000000172314
Vitis vinifera	chr9	6	CH_vvi_36	88	257	5.10963e-19

Available child term results

GO term	Description	Number of clusters
GO:0005524	ATP binding	54
GO:0016208	AMP binding	3
GO:0043531	ADP binding	1129

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V