Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0032553
- Description
- ribonucleotide binding
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_196 | 28 | 77 | 0.00000628374 |
Arabidopsis lyrata | scaffold_2 | 6 | CH_aly_45 | 30 | 85 | 0.00000337968 |
Carica papaya | supercontig_27 | 3 | CH_cpa_28 | 25 | 42 | 0.0000000000141211 |
Carica papaya | supercontig_27 | 6 | CH_cpa_12 | 25 | 42 | 0.0000000000141211 |
Glycine max | Gm06 | 6 | CH_gma_10 | 81 | 137 | 7.61656e-37 |
Gossypium raimondii | Chr02 | 4 | CH_gra_78 | 10 | 13 | 0.00051469 |
Gossypium raimondii | Chr02 | 5 | CH_gra_84 | 10 | 13 | 0.000616419 |
Oryza sativa ssp. japonica | 4 | 1 | CH_osa_333 | 19 | 65 | 0.00024066 |
Oryza sativa ssp. japonica | 4 | 2 | CH_osa_357 | 19 | 65 | 0.000305229 |
Oryza sativa ssp. japonica | 4 | 4 | CH_osa_79 | 36 | 167 | 0.00000076087 |
Oryza sativa ssp. japonica | 4 | 5 | CH_osa_91 | 36 | 167 | 0.00000114682 |
Theobroma cacao | scaffold_2 | 4 | CH_tca_40 | 16 | 24 | 0.0000000540816 |
Theobroma cacao | scaffold_2 | 5 | CH_tca_43 | 16 | 24 | 0.000000074385 |
Vitis vinifera | chr18 | 3 | CH_vvi_250 | 30 | 71 | 0.00000452302 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0005524 | ATP binding | 54 |
GO:0005525 | GTP binding | 29 |
GO:0010181 | FMN binding | 71 |
GO:0016208 | AMP binding | 3 |
GO:0030553 | cGMP binding | 3 |
GO:0032555 | purine ribonucleotide binding | 30 |
GO:0032559 | adenyl ribonucleotide binding | 76 |
GO:0043531 | ADP binding | 1129 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |