PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0031640
Description: killing of cells of other organism

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_6	6	CH_aly_68	12	193	0.0000652913
Arabidopsis lyrata	scaffold_7	6	CH_aly_29	12	95	0.0000000150628
Arabidopsis lyrata	scaffold_8	6	CH_aly_52	15	287	0.00000681008
Arabidopsis thaliana	1	1	CH_ath_151	5	5	0.00000139906
Arabidopsis thaliana	1	1	CH_ath_263	4	4	0.000167882
Arabidopsis thaliana	2	1	CH_ath_137	9	37	0.000000658118
Arabidopsis thaliana	3	1	CH_ath_347	4	5	0.000833788
Arabidopsis thaliana	4	1	CH_ath_119	8	22	0.000000228651
Arabidopsis thaliana	4	1	CH_ath_348	4	5	0.000833788
Arabidopsis thaliana	4	1	CH_ath_70	7	9	0.00000000341081
Arabidopsis thaliana	1	2	CH_ath_309	4	4	0.000167882
Arabidopsis thaliana	1	2	CH_ath_178	5	5	0.00000139906
Arabidopsis thaliana	2	2	CH_ath_166	9	37	0.000000658118
Arabidopsis thaliana	3	2	CH_ath_423	4	5	0.000833788
Arabidopsis thaliana	4	2	CH_ath_152	8	22	0.000000228651
Arabidopsis thaliana	4	2	CH_ath_424	4	5	0.000833788
Arabidopsis thaliana	4	2	CH_ath_93	7	9	0.00000000341081
Arabidopsis thaliana	1	3	CH_ath_190	5	5	0.00000147508
Arabidopsis thaliana	1	3	CH_ath_326	4	4	0.000175128
Arabidopsis thaliana	2	3	CH_ath_121	10	37	0.0000000168496
Arabidopsis thaliana	3	3	CH_ath_448	4	5	0.000869711
Arabidopsis thaliana	4	3	CH_ath_165	8	22	0.000000248686
Arabidopsis thaliana	4	3	CH_ath_105	7	9	0.00000000367346
Arabidopsis thaliana	4	3	CH_ath_449	4	5	0.000869711
Arabidopsis thaliana	2	4	CH_ath_94	10	89	0.000150331
Arabidopsis thaliana	4	4	CH_ath_65	11	94	0.0000161086
Arabidopsis thaliana	2	5	CH_ath_114	10	89	0.000150331
Arabidopsis thaliana	4	5	CH_ath_72	11	94	0.0000161086
Arabidopsis thaliana	2	6	CH_ath_44	10	37	0.0000000168496
Arabidopsis thaliana	4	6	CH_ath_80	11	94	0.0000179968
Capsella rubella	scaffold_7	6	CH_cru_35	12	97	0.00000000207534
Capsella rubella	scaffold_8	6	CH_cru_111	10	186	0.000978472
Eucalyptus grandis	scaffold_3	3	CH_egr_77	7	9	9.02502e-22
Glycine max	Gm09	3	CH_gma_478	2	2	0.00037
Glycine max	Gm15	3	CH_gma_477	2	2	0.00037
Gossypium raimondii	Chr04	3	CH_gra_33	6	6	9.05414e-18
Gossypium raimondii	Chr05	3	CH_gra_62	5	5	0.0000000000000484125
Prunus persica	scaffold_4	3	CH_ppe_256	3	4	0.00000261849
Solanum lycopersicum	ch08	2	CH_sly_367	2	2	0.000172122
Solanum lycopersicum	ch08	3	CH_sly_483	2	2	0.000172122

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V