PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0031625
Description: ubiquitin protein ligase binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	1	CH_aly_13	7	11	8.28671e-17
Arabidopsis lyrata	scaffold_2	2	CH_aly_22	7	11	0.00000000000000552747
Arabidopsis lyrata	scaffold_2	3	CH_aly_27	7	11	0.00000000000000552747
Capsella rubella	scaffold_2	1	CH_cru_54	4	4	0.00000000133534
Capsella rubella	scaffold_6	1	CH_cru_144	3	5	0.0000317854
Capsella rubella	scaffold_6	2	CH_cru_247	3	5	0.000176639
Capsella rubella	scaffold_2	3	CH_cru_110	4	4	0.0000000141752
Capsella rubella	scaffold_6	3	CH_cru_284	3	5	0.000176639
Carica papaya	supercontig_128	1	CH_cpa_190	2	2	0.000970827
Cucumis melo	CM3.5_scaffold01595	3	CH_cme_113	4	6	0.0000000976942
Eucalyptus grandis	scaffold_2	1	CH_egr_78	7	11	6.64905e-18
Eucalyptus grandis	scaffold_2	2	CH_egr_153	7	11	0.00000000000000440603
Eucalyptus grandis	scaffold_6	2	CH_egr_558	3	3	0.0000279382
Eucalyptus grandis	scaffold_2	3	CH_egr_168	7	11	0.00000000000000440603
Eucalyptus grandis	scaffold_6	3	CH_egr_629	3	3	0.0000279382
Fragaria vesca	LG5	1	CH_fve_18	6	10	0.0000000000000985677
Fragaria vesca	LG5	2	CH_fve_29	6	10	0.00000000000136739
Fragaria vesca	LG5	3	CH_fve_44	6	10	0.00000000000215469
Malus domestica	17	1	CH_mdo_84	3	3	0.00000260792
Malus domestica	17	2	CH_mdo_101	3	3	0.00000364342
Malus domestica	17	3	CH_mdo_148	3	3	0.00000492181
Medicago truncatula	chr1	1	CH_mtr_506	3	7	0.000383312
Medicago truncatula	chr4	1	CH_mtr_295	4	11	0.00000188245
Medicago truncatula	chr5	1	CH_mtr_63	8	42	0.0000000000000176592
Medicago truncatula	chr7	1	CH_mtr_47	8	33	0.00000000000000427598
Medicago truncatula	chr2	2	CH_mtr_541	3	3	0.000165857
Medicago truncatula	chr2	3	CH_mtr_701	3	3	0.000201716
Medicago truncatula	chr7	4	CH_mtr_40	10	93	4.65039e-16
Prunus persica	scaffold_5	1	CH_ppe_23	7	11	6.25456e-18
Prunus persica	scaffold_5	2	CH_ppe_40	7	11	6.20901e-16
Prunus persica	scaffold_5	3	CH_ppe_49	7	11	6.20901e-16
Solanum lycopersicum	ch01	3	CH_sly_16	12	18	7.58063e-28
Solanum lycopersicum	ch01	6	CH_sly_16	12	18	7.58063e-28
Solanum tuberosum	chr01	1	CH_stu_5	15	17	7.58184e-41
Solanum tuberosum	chr10	1	CH_stu_338	3	3	0.0000290937
Solanum tuberosum	chr01	2	CH_stu_7	15	17	3.06831e-38
Solanum tuberosum	chr10	2	CH_stu_415	3	3	0.0000788359
Solanum tuberosum	chr01	3	CH_stu_13	15	17	6.43127e-38
Solanum tuberosum	chr10	3	CH_stu_579	3	3	0.0000895759
Solanum tuberosum	chr01	4	CH_stu_6	15	17	7.58184e-41
Solanum tuberosum	chr01	5	CH_stu_7	15	17	3.06831e-38
Solanum tuberosum	chr01	6	CH_stu_16	15	17	6.43127e-38
Vitis vinifera	chr5	3	CH_vvi_231	3	3	0.00000186676

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V