PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr5	3	CH_cla_230	3	3	0.000200213
Cucumis melo	CM3.5_scaffold00006	2	CH_cme_171	3	3	0.000194244
Cucumis melo	CM3.5_scaffold00006	3	CH_cme_262	3	3	0.000194244
Eucalyptus grandis	scaffold_5	2	CH_egr_149	8	10	0.00000000000000398869
Eucalyptus grandis	scaffold_5	3	CH_egr_166	8	10	0.00000000000000398869
Glycine max	Gm03	2	CH_gma_37	7	7	0.0000000000000120229
Glycine max	Gm07	2	CH_gma_57	6	6	0.00000000000570024
Glycine max	Gm03	3	CH_gma_49	7	7	0.0000000000000120229
Glycine max	Gm07	3	CH_gma_70	6	6	0.00000000000570024
Medicago truncatula	chr8	2	CH_mtr_21	11	14	5.61701e-25
Medicago truncatula	chr8	3	CH_mtr_25	11	14	5.61701e-25
Medicago truncatula	chr8	5	CH_mtr_23	11	14	5.61701e-25
Medicago truncatula	chr8	6	CH_mtr_30	11	14	5.61701e-25
Oryza sativa ssp. japonica	8	2	CH_osa_234	3	3	0.0000235691
Oryza sativa ssp. japonica	8	3	CH_osa_270	3	3	0.0000235691
Theobroma cacao	scaffold_9	2	CH_tca_123	5	11	0.000000157344
Theobroma cacao	scaffold_9	3	CH_tca_165	5	11	0.000000157344

GO term	Description	Number of clusters
GO:0010113	negative regulation of systemic acquired resistance	1
GO:1900425	negative regulation of defense response to bacterium	25

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V