PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0031225
Description: anchored to membrane

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00002	2	CH_atr_248	3	3	0.00099321
Amborella trichopoda	scaffold00002	8	CH_atr_7	3	3	0.000669819
Amborella trichopoda	scaffold00002	9	CH_atr_16	3	3	0.000758376
Arabidopsis lyrata	scaffold_3	2	CH_aly_148	5	5	0.00000193415
Arabidopsis lyrata	scaffold_3	3	CH_aly_167	5	5	0.00000203737
Arabidopsis thaliana	3	2	CH_ath_201	5	5	0.00000377912
Arabidopsis thaliana	3	3	CH_ath_212	5	5	0.00000383437
Capsella rubella	scaffold_3	2	CH_cru_316	4	4	0.000608743
Capsella rubella	scaffold_3	3	CH_cru_358	4	4	0.000616305
Carica papaya	supercontig_103	2	CH_cpa_197	5	18	0.000457755
Carica papaya	supercontig_103	3	CH_cpa_299	5	18	0.000501685
Eucalyptus grandis	scaffold_10	2	CH_egr_434	5	6	0.000000415255
Eucalyptus grandis	scaffold_10	3	CH_egr_500	5	6	0.000000456445
Gossypium raimondii	Chr01	2	CH_gra_316	6	29	0.000449998
Gossypium raimondii	Chr06	2	CH_gra_194	4	4	0.0000353442
Gossypium raimondii	Chr06	3	CH_gra_234	4	4	0.0000403605
Lotus japonicus	chr1	2	CH_lja_156	3	3	0.000600385
Medicago truncatula	chr1	2	CH_mtr_410	4	5	0.0000152182
Medicago truncatula	chr2	2	CH_mtr_309	5	8	0.000000437337
Medicago truncatula	chr6	2	CH_mtr_301	6	18	0.000000364071
Medicago truncatula	chr1	3	CH_mtr_516	4	5	0.0000204149
Medicago truncatula	chr2	3	CH_mtr_379	5	8	0.000000631859
Medicago truncatula	chr6	3	CH_mtr_377	6	18	0.000000566072
Populus trichocarpa	Chr14	2	CH_ptr_173	5	5	0.000000164651
Populus trichocarpa	Chr14	3	CH_ptr_232	5	5	0.000000207326
Prunus persica	scaffold_6	2	CH_ppe_235	5	9	0.00000973389
Prunus persica	scaffold_6	3	CH_ppe_289	5	9	0.0000104685
Ricinus communis	30076	2	CH_rco_128	4	4	0.0000116002
Ricinus communis	30076	3	CH_rco_171	4	4	0.0000135813
Solanum lycopersicum	ch06	2	CH_sly_346	4	6	0.000149176
Solanum lycopersicum	ch09	2	CH_sly_141	5	5	0.0000000404938
Solanum lycopersicum	ch06	3	CH_sly_491	4	6	0.000180427
Solanum lycopersicum	ch09	3	CH_sly_197	5	5	0.0000000514251
Solanum tuberosum	chr06	2	CH_stu_478	4	6	0.000185836
Solanum tuberosum	chr09	2	CH_stu_409	4	5	0.0000621594
Solanum tuberosum	chr06	3	CH_stu_640	4	6	0.000206077

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V