Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0031224
- Description
- intrinsic to membrane
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_7 | 2 | CH_egr_742 | 12 | 39 | 0.000359678 |
Eucalyptus grandis | scaffold_7 | 3 | CH_egr_795 | 13 | 41 | 0.00028203 |
Eucalyptus grandis | scaffold_7 | 4 | CH_egr_252 | 27 | 255 | 0.000929368 |
Eucalyptus grandis | scaffold_9 | 4 | CH_egr_251 | 18 | 118 | 0.00075593 |
Eucalyptus grandis | scaffold_7 | 5 | CH_egr_272 | 12 | 39 | 0.000359678 |
Glycine max | Gm16 | 1 | CH_gma_306 | 11 | 30 | 0.000330823 |
Medicago truncatula | chr1 | 3 | CH_mtr_780 | 12 | 54 | 0.000420641 |
Medicago truncatula | chr1 | 6 | CH_mtr_257 | 12 | 54 | 0.000420641 |
Oryza sativa ssp. japonica | 7 | 2 | CH_osa_412 | 13 | 69 | 0.000776833 |
Oryza sativa ssp. japonica | 7 | 5 | CH_osa_154 | 15 | 88 | 0.000257402 |
Oryza sativa ssp. japonica | 7 | 6 | CH_osa_148 | 16 | 88 | 0.000101261 |
Prunus persica | scaffold_8 | 3 | CH_ppe_529 | 18 | 79 | 0.000869563 |
Prunus persica | scaffold_8 | 6 | CH_ppe_108 | 25 | 111 | 0.00000249836 |
Thellungiella parvula | ch3-1 | 5 | CH_tpa_34 | 10 | 25 | 0.000864075 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0005643 | nuclear pore | 21 |
GO:0005779 | integral to peroxisomal membrane | 5 |
GO:0008076 | voltage-gated potassium channel complex | 3 |
GO:0016021 | integral to membrane | 57 |
GO:0030173 | integral to Golgi membrane | 12 |
GO:0031225 | anchored to membrane | 36 |
GO:0031227 | intrinsic to endoplasmic reticulum membrane | 5 |
GO:0031305 | integral to mitochondrial inner membrane | 1 |
GO:0031307 | integral to mitochondrial outer membrane | 1 |
GO:0031357 | integral to chloroplast inner membrane | 4 |
GO:0034707 | chloride channel complex | 1 |
GO:0042765 | GPI-anchor transamidase complex | 2 |
GO:0071458 | integral to cytosolic side of endoplasmic reticulum membrane | 2 |
GO:0072546 | ER membrane protein complex | 17 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |