Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0031047
- Description
- gene silencing by RNA
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | scaffold00012 | 3 | CH_atr_228 | 4 | 9 | 0.0000679774 |
Beta vulgaris | Bvchr5.sca024 | 1 | CH_bvu_129 | 3 | 3 | 0.0000215402 |
Beta vulgaris | Bvchr2.sca001 | 3 | CH_bvu_89 | 5 | 6 | 0.0000000213255 |
Fragaria vesca | scf0513178 | 3 | CH_fve_24 | 8 | 13 | 0.00000000000000637996 |
Gossypium raimondii | Chr11 | 3 | CH_gra_163 | 6 | 28 | 0.000000778613 |
Manihot esculenta | scaffold09492 | 3 | CH_mes_198 | 3 | 3 | 0.000191753 |
Medicago truncatula | chr2 | 3 | CH_mtr_661 | 3 | 3 | 0.000129716 |
Medicago truncatula | chr3 | 3 | CH_mtr_492 | 4 | 8 | 0.0000110992 |
Populus trichocarpa | Chr03 | 1 | CH_ptr_46 | 6 | 7 | 8.95723e-16 |
Populus trichocarpa | Chr03 | 3 | CH_ptr_66 | 7 | 7 | 0.00000000000000216305 |
Prunus persica | scaffold_6 | 3 | CH_ppe_387 | 3 | 3 | 0.000152775 |
Thellungiella parvula | ch5-3 | 3 | CH_tpa_101 | 5 | 15 | 0.00000369633 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0016246 | RNA interference | 2 |
GO:0031054 | pre-miRNA processing | 2 |
GO:0035196 | production of miRNAs involved in gene silencing by miRNA | 2 |
GO:0035278 | negative regulation of translation involved in gene silencing by miRNA | 18 |
GO:0035279 | mRNA cleavage involved in gene silencing by miRNA | 6 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |