PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr9.sca001	1	CH_bvu_6	8	11	5.23551e-20
Beta vulgaris	Bvchr9.sca001	2	CH_bvu_6	8	11	5.23551e-20
Beta vulgaris	Bvchr9.sca001	3	CH_bvu_10	8	11	5.12181e-19
Citrullus lanatus	Chr8	1	CH_cla_57	4	15	0.0000000126157
Citrullus lanatus	Chr8	2	CH_cla_62	4	15	0.0000000126157
Citrullus lanatus	Chr8	3	CH_cla_52	5	15	0.0000000000247999
Gossypium raimondii	Chr13	1	CH_gra_246	2	4	0.000320556
Gossypium raimondii	Chr13	2	CH_gra_292	2	4	0.000320556
Gossypium raimondii	Chr13	3	CH_gra_432	2	4	0.000961633
Manihot esculenta	scaffold03569	2	CH_mes_12	4	4	0.0000000000025654
Manihot esculenta	scaffold03569	3	CH_mes_18	4	4	0.0000000000025654
Oryza sativa ssp. japonica	8	1	CH_osa_312	4	29	0.000211202
Oryza sativa ssp. japonica	3	2	CH_osa_38	9	40	0.00000000000000303642
Oryza sativa ssp. japonica	8	2	CH_osa_328	4	29	0.000211202
Oryza sativa ssp. japonica	11	3	CH_osa_312	4	18	0.0000463175
Oryza sativa ssp. japonica	3	3	CH_osa_47	9	40	0.00000000000000303642
Oryza sativa ssp. japonica	8	3	CH_osa_435	4	29	0.000357297
Oryza sativa ssp. japonica	3	4	CH_osa_26	11	97	1.06845e-17
Oryza sativa ssp. japonica	3	5	CH_osa_25	11	97	1.06845e-17
Oryza sativa ssp. japonica	3	6	CH_osa_33	11	97	5.31172e-17
Populus trichocarpa	Chr06	3	CH_ptr_91	6	26	0.000000000000332621
Prunus persica	scaffold_1	3	CH_ppe_349	2	2	0.0000720851
Theobroma cacao	scaffold_7	1	CH_tca_103	3	4	0.000000111532
Theobroma cacao	scaffold_7	2	CH_tca_116	3	4	0.000000111532
Theobroma cacao	scaffold_7	3	CH_tca_171	3	4	0.000000278823

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V