PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0022804
Description: active transmembrane transporter activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00006	4	CH_atr_48	10	92	0.000150658
Amborella trichopoda	scaffold00006	5	CH_atr_27	10	37	0.0000000820662
Amborella trichopoda	scaffold00006	6	CH_atr_51	10	37	0.00000050649
Eucalyptus grandis	scaffold_2	5	CH_egr_113	10	12	0.000000000000519638
Eucalyptus grandis	scaffold_2	6	CH_egr_112	11	12	0.00000000000000378324
Fragaria vesca	LG5	1	CH_fve_99	7	15	0.000000667197
Fragaria vesca	LG5	5	CH_fve_52	11	88	0.0000939658
Fragaria vesca	LG5	6	CH_fve_100	11	88	0.000381504
Glycine max	Gm20	2	CH_gma_322	5	6	0.000148059
Glycine max	Gm20	3	CH_gma_442	5	6	0.000279967
Gossypium raimondii	Chr08	1	CH_gra_149	5	5	0.00000681712
Gossypium raimondii	Chr08	2	CH_gra_183	5	5	0.0000188146
Gossypium raimondii	Chr08	3	CH_gra_225	5	5	0.0000303813
Medicago truncatula	chr1	2	CH_mtr_420	7	24	0.0000220832
Medicago truncatula	chr1	3	CH_mtr_408	8	24	0.00000123235
Populus trichocarpa	Chr10	2	CH_ptr_375	5	7	0.000272764
Populus trichocarpa	Chr10	3	CH_ptr_521	5	7	0.000512948
Prunus persica	scaffold_1	4	CH_ppe_115	10	84	0.000605291
Prunus persica	scaffold_1	5	CH_ppe_117	11	84	0.000342126
Prunus persica	scaffold_1	6	CH_ppe_159	11	84	0.000795029
Solanum tuberosum	chr12	4	CH_stu_128	11	86	0.0000243054
Solanum tuberosum	chr12	6	CH_stu_153	21	239	0.00000336692
Vitis vinifera	chr2	1	CH_vvi_38	13	21	1.02741e-16
Vitis vinifera	chr1	2	CH_vvi_342	5	8	0.000577385
Vitis vinifera	chr2	2	CH_vvi_40	13	21	0.00000000000000156646
Vitis vinifera	chr2	3	CH_vvi_68	13	21	0.0000000000000143353
Vitis vinifera	chr2	4	CH_vvi_28	13	21	1.02741e-16
Vitis vinifera	chr2	5	CH_vvi_31	13	21	0.00000000000000156646
Vitis vinifera	chr2	6	CH_vvi_49	13	21	0.0000000000000143353

Available child term results

GO term	Description	Number of clusters
GO:0004008	copper-exporting ATPase activity	1
GO:0005315	inorganic phosphate transmembrane transporter activity	9
GO:0005351	sugar:hydrogen symporter activity	13
GO:0005388	calcium-transporting ATPase activity	31
GO:0005427	proton-dependent oligopeptide secondary active transmembrane transporter activity	3
GO:0005432	calcium:sodium antiporter activity	5
GO:0005451	monovalent cation:hydrogen antiporter activity	3
GO:0005452	inorganic anion exchanger activity	1
GO:0008271	secondary active sulfate transmembrane transporter activity	14
GO:0008508	bile acid:sodium symporter activity	9
GO:0008551	cadmium-exporting ATPase activity	3
GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	10
GO:0008559	xenobiotic-transporting ATPase activity	6
GO:0009671	nitrate:hydrogen symporter activity	2
GO:0009674	potassium:sodium symporter activity	18
GO:0009678	hydrogen-translocating pyrophosphatase activity	10
GO:0010174	nucleoside transmembrane transporter activity, against a concentration gradient	4
GO:0010542	nitrate efflux transmembrane transporter activity	26
GO:0015291	secondary active transmembrane transporter activity	19
GO:0015295	solute:hydrogen symporter activity	16
GO:0015297	antiporter activity	1
GO:0015299	solute:hydrogen antiporter activity	72
GO:0015301	anion:anion antiporter activity	7
GO:0015367	oxoglutarate:malate antiporter activity	3
GO:0015369	calcium:hydrogen antiporter activity	26
GO:0015370	solute:sodium symporter activity	6
GO:0015377	cation:chloride symporter activity	6
GO:0015385	sodium:hydrogen antiporter activity	8
GO:0015398	high affinity secondary active ammonium transmembrane transporter activity	2
GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	5
GO:0015415	phosphate ion transmembrane-transporting ATPase activity	5
GO:0015446	arsenite-transmembrane transporting ATPase activity	16
GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4
GO:0015505	uracil:cation symporter activity	33
GO:0015519	D-xylose:hydrogen symporter activity	3
GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6
GO:0019829	cation-transporting ATPase activity	17
GO:0022821	potassium ion antiporter activity	20
GO:0042626	ATPase activity, coupled to transmembrane movement of substances	94
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0046961	proton-transporting ATPase activity, rotational mechanism	3
GO:0090448	glucosinolate:hydrogen symporter activity	25

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V