PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_6	2	CH_cru_293	3	3	0.000437934
Capsella rubella	scaffold_6	3	CH_cru_334	3	3	0.00045784
Eucalyptus grandis	scaffold_7	2	CH_egr_315	5	6	0.00000000240006
Eucalyptus grandis	scaffold_7	3	CH_egr_220	6	6	0.00000000000085085
Prunus persica	scaffold_4	2	CH_ppe_354	3	3	0.000294794
Prunus persica	scaffold_7	2	CH_ppe_311	4	10	0.000130311
Prunus persica	scaffold_4	3	CH_ppe_437	3	3	0.000309534
Prunus persica	scaffold_7	3	CH_ppe_379	4	10	0.000139122
Theobroma cacao	scaffold_9	2	CH_tca_347	3	6	0.000615458
Zea mays	4	2	CH_zma_35	5	6	0.00000000237509
Zea mays	4	3	CH_zma_58	5	6	0.00000000402261

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V