PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_3	1	CH_cre_47	3	6	0.00017368
Citrullus lanatus	Chr9	2	CH_cla_136	4	11	0.0000676969
Citrullus lanatus	Chr9	3	CH_cla_217	4	11	0.0000986026
Malus domestica	1	2	CH_mdo_131	5	31	0.0000235886
Malus domestica	1	3	CH_mdo_175	5	31	0.0000258011
Malus domestica	1	5	CH_mdo_2	12	128	0.0000000000000374718
Malus domestica	1	6	CH_mdo_7	12	128	0.0000000000000608916
Prunus persica	scaffold_2	2	CH_ppe_215	4	7	0.00000322515
Prunus persica	scaffold_2	3	CH_ppe_270	4	7	0.00000397022

GO term	Description	Number of clusters
GO:0031314	extrinsic to mitochondrial inner membrane	20
GO:0042406	extrinsic to endoplasmic reticulum membrane	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V