PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Glycine max	Gm06	1	CH_gma_304	3	4	0.000325915
Oryza sativa ssp. japonica	5	1	CH_osa_183	4	5	0.00000190174
Oryza sativa ssp. japonica	5	2	CH_osa_177	4	5	0.00000235805
Oryza sativa ssp. japonica	5	3	CH_osa_223	4	5	0.00000300871
Oryza sativa ssp. japonica	5	7	CH_osa_19	4	5	0.000000782497
Oryza sativa ssp. japonica	5	8	CH_osa_14	4	5	0.00000103315
Oryza sativa ssp. japonica	5	9	CH_osa_14	4	5	0.00000120988
Populus trichocarpa	Chr06	1	CH_ptr_260	3	3	0.0000774785
Populus trichocarpa	Chr06	2	CH_ptr_321	3	3	0.000103131
Populus trichocarpa	Chr06	3	CH_ptr_413	3	3	0.000120948
Zea mays	chloroplast	2	CH_zma_2	20	57	2.83385e-37
Zea mays	chloroplast	3	CH_zma_2	20	57	7.50331e-37

GO term	Description	Number of clusters
GO:0008097	5S rRNA binding	7

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V