Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0019637
- Description
- organophosphate metabolic process
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Manihot esculenta | scaffold11069 | 1 | CH_mes_173 | 4 | 4 | 0.000826097 |
Physcomitrella patens | scaffold_61 | 6 | CH_ppa_7 | 15 | 120 | 0.000556191 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0006003 | fructose 2,6-bisphosphate metabolic process | 4 |
GO:0006065 | UDP-glucuronate biosynthetic process | 5 |
GO:0006164 | purine nucleotide biosynthetic process | 1 |
GO:0006177 | GMP biosynthetic process | 2 |
GO:0006182 | cGMP biosynthetic process | 27 |
GO:0006183 | GTP biosynthetic process | 11 |
GO:0006184 | GTP catabolic process | 6 |
GO:0006200 | ATP catabolic process | 7 |
GO:0006231 | dTMP biosynthetic process | 7 |
GO:0006233 | dTDP biosynthetic process | 3 |
GO:0006505 | GPI anchor metabolic process | 2 |
GO:0006656 | phosphatidylcholine biosynthetic process | 4 |
GO:0006741 | NADP biosynthetic process | 20 |
GO:0009051 | pentose-phosphate shunt, oxidative branch | 2 |
GO:0009052 | pentose-phosphate shunt, non-oxidative branch | 3 |
GO:0009117 | nucleotide metabolic process | 1 |
GO:0009166 | nucleotide catabolic process | 1 |
GO:0009190 | cyclic nucleotide biosynthetic process | 1 |
GO:0009205 | purine ribonucleoside triphosphate metabolic process | 2 |
GO:0009225 | nucleotide-sugar metabolic process | 6 |
GO:0009435 | NAD biosynthetic process | 1 |
GO:0010322 | regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2 |
GO:0015965 | diadenosine tetraphosphate metabolic process | 3 |
GO:0015969 | guanosine tetraphosphate metabolic process | 1 |
GO:0015986 | ATP synthesis coupled proton transport | 7 |
GO:0016255 | attachment of GPI anchor to protein | 38 |
GO:0019277 | UDP-N-acetylgalactosamine biosynthetic process | 1 |
GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 9 |
GO:0019305 | dTDP-rhamnose biosynthetic process | 2 |
GO:0019358 | nicotinate nucleotide salvage | 2 |
GO:0032312 | regulation of ARF GTPase activity | 3 |
GO:0032313 | regulation of Rab GTPase activity | 3 |
GO:0033356 | UDP-L-arabinose metabolic process | 2 |
GO:0036092 | phosphatidylinositol-3-phosphate biosynthetic process | 6 |
GO:0042351 | 'de novo' GDP-L-fucose biosynthetic process | 2 |
GO:0043647 | inositol phosphate metabolic process | 2 |
GO:0044205 | 'de novo' UMP biosynthetic process | 8 |
GO:0045337 | farnesyl diphosphate biosynthetic process | 6 |
GO:0045980 | negative regulation of nucleotide metabolic process | 3 |
GO:0046033 | AMP metabolic process | 4 |
GO:0046034 | ATP metabolic process | 4 |
GO:0046443 | FAD metabolic process | 1 |
GO:0046473 | phosphatidic acid metabolic process | 2 |
GO:0046488 | phosphatidylinositol metabolic process | 2 |
GO:0046496 | nicotinamide nucleotide metabolic process | 3 |
GO:0046854 | phosphatidylinositol phosphorylation | 3 |
GO:0046856 | phosphatidylinositol dephosphorylation | 4 |
GO:0046939 | nucleotide phosphorylation | 2 |
GO:2001295 | malonyl-CoA biosynthetic process | 3 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |