PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr3.sca003	1	CH_bvu_67	3	3	0.0000000559485
Beta vulgaris	Bvchr3.sca003	2	CH_bvu_78	3	3	0.0000000559485
Beta vulgaris	Bvchr3.sca003	3	CH_bvu_95	3	3	0.0000000559485
Brassica rapa	A06	1	CH_bra_7	5	7	0.0000000000000534739
Brassica rapa	A06	2	CH_bra_15	5	7	0.0000000000000534739
Brassica rapa	A06	3	CH_bra_16	5	7	0.0000000000000534739
Citrullus lanatus	Chr1	2	CH_cla_193	2	2	0.000255341
Cucumis melo	CM3.5_scaffold00005	1	CH_cme_156	2	2	0.000229639
Lotus japonicus	chr1	1	CH_lja_76	2	2	0.0000672269
Lotus japonicus	chr1	2	CH_lja_102	2	2	0.0000672269
Lotus japonicus	chr1	3	CH_lja_127	2	2	0.0000672269
Populus trichocarpa	Chr15	1	CH_ptr_352	2	2	0.000747031
Populus trichocarpa	Chr15	2	CH_ptr_278	3	13	0.0000372047
Populus trichocarpa	Chr15	3	CH_ptr_356	3	13	0.0000372047
Thellungiella parvula	ch2-4	1	CH_tpa_37	3	3	0.0000000947339
Thellungiella parvula	ch2-4	2	CH_tpa_59	3	3	0.0000000947339
Thellungiella parvula	ch2-4	3	CH_tpa_69	3	3	0.0000000947339

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V