PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016998
Description: cell wall macromolecule catabolic process

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	1	CH_atr_141	3	3	0.0000464769
Amborella trichopoda	scaffold00022	2	CH_atr_142	3	3	0.0000511246
Chlamydomonas reinhardtii	chromosome_14	3	CH_cre_30	4	4	0.000000118309
Chlamydomonas reinhardtii	chromosome_14	3	CH_cre_23	5	8	0.00000000968902
Chlamydomonas reinhardtii	chromosome_14	6	CH_cre_15	11	297	0.0000000175257
Citrus sinensis	scaffold00006	1	CH_csi_62	4	5	0.000000552851
Eucalyptus grandis	scaffold_8	1	CH_egr_613	3	4	0.00073621
Eucalyptus grandis	scaffold_8	2	CH_egr_776	3	4	0.000812291
Eucalyptus grandis	scaffold_9	4	CH_egr_106	12	127	0.000000000000205221
Eucalyptus grandis	scaffold_9	5	CH_egr_110	12	127	0.000000000000316151
Eucalyptus grandis	scaffold_9	6	CH_egr_136	12	127	0.00000000000145688
Fragaria vesca	LG6	1	CH_fve_140	4	10	0.000012296
Fragaria vesca	LG6	2	CH_fve_162	4	10	0.0000136233
Fragaria vesca	LG6	3	CH_fve_237	4	10	0.0000284698
Medicago truncatula	chr4	1	CH_mtr_469	3	4	0.000224096
Medicago truncatula	chr4	2	CH_mtr_580	3	4	0.000258222
Medicago truncatula	chr4	3	CH_mtr_757	3	4	0.000308882
Populus trichocarpa	scaffold_47	3	CH_ptr_178	6	16	0.00000000408766
Prunus persica	scaffold_3	1	CH_ppe_104	5	7	0.00000000726411
Prunus persica	scaffold_3	2	CH_ppe_125	5	7	0.00000000898734
Prunus persica	scaffold_3	3	CH_ppe_154	5	7	0.0000000110229
Ricinus communis	29681	1	CH_rco_86	4	5	0.000000446488
Ricinus communis	29681	2	CH_rco_95	4	5	0.000000580608
Ricinus communis	29681	3	CH_rco_137	4	5	0.00000104715
Solanum tuberosum	chr02	1	CH_stu_380	4	19	0.000111125
Solanum tuberosum	chr02	2	CH_stu_428	4	19	0.000140073
Theobroma cacao	scaffold_1	1	CH_tca_207	3	3	0.0000417154
Theobroma cacao	scaffold_1	2	CH_tca_229	3	3	0.0000497741
Theobroma cacao	scaffold_1	3	CH_tca_294	3	3	0.0000588087

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V