PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Fragaria vesca	LG2	2	CH_fve_106	4	12	0.000000105052
Fragaria vesca	LG2	3	CH_fve_148	4	12	0.000000157548
Glycine max	Gm03	2	CH_gma_212	3	3	0.00000316245
Glycine max	Gm03	3	CH_gma_279	3	3	0.00000533921
Lotus japonicus	chr1	8	CH_lja_11	2	2	0.000709295
Medicago truncatula	chr1	1	CH_mtr_36	6	8	2.93771e-17
Vitis vinifera	chr7	2	CH_vvi_171	3	3	0.00000101823
Vitis vinifera	chr7	3	CH_vvi_227	3	3	0.00000140007

GO term	Description	Number of clusters
GO:0004512	inositol-3-phosphate synthase activity	3
GO:0045430	chalcone isomerase activity	25

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V