PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016846
Description: carbon-sulfur lyase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr6.sca026	1	CH_bvu_219	3	7	0.000864315
Cucumis melo	CM3.5_scaffold00089	3	CH_cme_206	3	3	0.0000682931
Eucalyptus grandis	scaffold_6	1	CH_egr_416	3	4	0.00000931685
Eucalyptus grandis	scaffold_6	2	CH_egr_626	3	4	0.0000831077
Eucalyptus grandis	scaffold_6	3	CH_egr_784	3	4	0.000234932
Glycine max	Gm09	1	CH_gma_199	3	3	0.0000122884
Glycine max	Gm09	2	CH_gma_320	3	3	0.000133119
Glycine max	Gm09	3	CH_gma_399	3	3	0.00019567
Gossypium raimondii	Chr04	1	CH_gra_148	3	3	0.00000659439
Gossypium raimondii	Chr04	2	CH_gra_232	3	3	0.000106212
Gossypium raimondii	Chr04	3	CH_gra_320	3	3	0.000161948
Malus domestica	10	1	CH_mdo_150	3	5	0.000104605
Malus domestica	9	1	CH_mdo_174	3	6	0.000209114
Malus domestica	10	2	CH_mdo_231	3	5	0.000315344
Malus domestica	9	2	CH_mdo_272	3	6	0.000630269
Malus domestica	10	3	CH_mdo_361	3	5	0.000484405
Malus domestica	9	3	CH_mdo_420	3	6	0.000968067
Populus trichocarpa	Chr17	1	CH_ptr_265	3	7	0.0000884455
Prunus persica	scaffold_8	1	CH_ppe_71	5	8	0.0000000000340284
Prunus persica	scaffold_8	2	CH_ppe_115	5	8	0.00000000367193
Prunus persica	scaffold_8	3	CH_ppe_152	5	8	0.0000000108801
Ricinus communis	29863	1	CH_rco_73	4	5	0.000000179546
Ricinus communis	29863	2	CH_rco_97	4	5	0.000000657997
Ricinus communis	29863	3	CH_rco_139	4	5	0.00000129636
Solanum tuberosum	chr01	1	CH_stu_232	4	5	0.000000280083
Solanum tuberosum	chr10	1	CH_stu_187	5	10	0.0000000148163
Solanum tuberosum	chr01	2	CH_stu_288	4	5	0.00000187147
Solanum tuberosum	chr01	3	CH_stu_425	4	5	0.00000300808
Theobroma cacao	scaffold_8	1	CH_tca_202	3	5	0.0000316972
Theobroma cacao	scaffold_8	2	CH_tca_309	3	5	0.000282619
Theobroma cacao	scaffold_8	3	CH_tca_409	3	5	0.000496867
Vitis vinifera	chr18	1	CH_vvi_36	7	10	3.32466e-17
Vitis vinifera	chr18	2	CH_vvi_43	7	10	0.00000000000000448908
Vitis vinifera	chr18	3	CH_vvi_69	7	10	0.0000000000000262368
Zea mays	2	1	CH_zma_43	4	6	0.00000000781003
Zea mays	2	2	CH_zma_63	4	6	0.000000135818
Zea mays	2	3	CH_zma_93	4	6	0.000000336748

Available child term results

GO term	Description	Number of clusters
GO:0004408	holocytochrome-c synthase activity	6
GO:0004462	lactoylglutathione lyase activity	10
GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	4
GO:0080108	S-alkylthiohydroximate lyase activity	10

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V