PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	1	CH_aly_219	3	6	0.000591906
Arabidopsis lyrata	scaffold_1	2	CH_aly_327	3	6	0.000714004
Arabidopsis thaliana	1	1	CH_ath_363	3	6	0.000968894
Arabidopsis thaliana	1	2	CH_ath_441	3	6	0.000968894
Arabidopsis thaliana	1	3	CH_ath_466	3	6	0.000968894
Vitis vinifera	chrUn	6	CH_vvi_47	15	81	8.49819e-17

GO term	Description	Number of clusters
GO:0003856	3-dehydroquinate synthase activity	3
GO:0004107	chorismate synthase activity	6
GO:0009899	ent-kaurene synthase activity	6
GO:0010333	terpene synthase activity	287
GO:0034007	S-linalool synthase activity	13
GO:0047461	(+)-delta-cadinene synthase activity	15
GO:0050551	myrcene synthase activity	1
GO:0052578	alpha-farnesene synthase activity	7
GO:0080013	(E,E)-geranyllinalool synthase activity	16
GO:0080016	(-)-E-beta-caryophyllene synthase activity	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V