PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016835
Description: carbon-oxygen lyase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Gossypium raimondii	Chr06	4	CH_gra_61	10	126	0.0000103375
Gossypium raimondii	Chr09	4	CH_gra_48	13	144	0.00000000378262
Gossypium raimondii	Chr09	5	CH_gra_45	14	144	0.00000000119038
Gossypium raimondii	Chr09	6	CH_gra_70	16	289	0.00000288672
Gossypium raimondii	Chr09	6	CH_gra_59	14	144	0.0000000237832
Oryza sativa ssp. japonica	3	4	CH_osa_98	10	215	0.00000751915
Oryza sativa ssp. japonica	3	5	CH_osa_121	10	215	0.0000200433
Oryza sativa ssp. japonica	3	6	CH_osa_151	10	215	0.000127916
Physcomitrella patens	scaffold_1	1	CH_ppa_21	4	5	0.00000470928
Physcomitrella patens	scaffold_1	2	CH_ppa_24	4	5	0.0000126261
Physcomitrella patens	scaffold_1	3	CH_ppa_53	4	5	0.0000521966
Ricinus communis	30128	6	CH_rco_25	10	49	0.00000000987724
Vitis vinifera	chr14	4	CH_vvi_70	10	83	0.00000248871
Vitis vinifera	chr14	5	CH_vvi_73	10	83	0.00000777064
Vitis vinifera	chr14	6	CH_vvi_94	11	83	0.00000182605

Available child term results

GO term	Description	Number of clusters
GO:0003855	3-dehydroquinate dehydratase activity	17
GO:0003856	3-dehydroquinate synthase activity	3
GO:0003861	3-isopropylmalate dehydratase activity	1
GO:0003994	aconitate hydratase activity	24
GO:0004089	carbonate dehydratase activity	25
GO:0004107	chorismate synthase activity	6
GO:0004124	cysteine synthase activity	29
GO:0004160	dihydroxy-acid dehydratase activity	5
GO:0004300	enoyl-CoA hydratase activity	4
GO:0004424	imidazoleglycerol-phosphate dehydratase activity	6
GO:0004634	phosphopyruvate hydratase activity	6
GO:0004655	porphobilinogen synthase activity	6
GO:0004664	prephenate dehydratase activity	1
GO:0004834	tryptophan synthase activity	25
GO:0004852	uroporphyrinogen-III synthase activity	3
GO:0008446	GDP-mannose 4,6-dehydratase activity	5
GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	1
GO:0008840	4-hydroxy-tetrahydrodipicolinate synthase	2
GO:0009899	ent-kaurene synthase activity	6
GO:0009978	allene oxide synthase activity	6
GO:0010333	terpene synthase activity	287
GO:0016508	long-chain-enoyl-CoA hydratase activity	2
GO:0016836	hydro-lyase activity	5
GO:0016838	carbon-oxygen lyase activity, acting on phosphates	6
GO:0030570	pectate lyase activity	20
GO:0034007	S-linalool synthase activity	13
GO:0047461	(+)-delta-cadinene synthase activity	15
GO:0047987	hydroperoxide dehydratase activity	3
GO:0050551	myrcene synthase activity	1
GO:0052578	alpha-farnesene synthase activity	7
GO:0052684	L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	2
GO:0080013	(E,E)-geranyllinalool synthase activity	16
GO:0080016	(-)-E-beta-caryophyllene synthase activity	2
GO:0080109	indole-3-acetonitrile nitrile hydratase activity	6

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V