PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00029	3	CH_atr_313	3	12	0.000452276
Beta vulgaris	Bvchr7.sca021	3	CH_bvu_199	3	5	0.0000399703
Capsella rubella	scaffold_6	3	CH_cru_216	3	5	0.0000192131
Malus domestica	11	3	CH_mdo_371	3	16	0.000649663
Solanum tuberosum	chr06	1	CH_stu_376	3	13	0.0000777632
Solanum tuberosum	chr06	2	CH_stu_441	3	13	0.000166564
Solanum tuberosum	chr06	3	CH_stu_228	5	13	0.000000000303916

GO term	Description	Number of clusters
GO:0004419	hydroxymethylglutaryl-CoA lyase activity	4
GO:0004451	isocitrate lyase activity	6
GO:0008935	1,4-dihydroxy-2-naphthoyl-CoA synthase activity	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V