PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016829
Description: lyase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00024	5	CH_atr_53	12	160	0.0003346
Cucumis melo	CM3.5_scaffold00021	5	CH_cme_43	11	107	0.000184878
Cucumis melo	CM3.5_scaffold00021	6	CH_cme_69	11	107	0.000940569
Fragaria vesca	scf0513158	4	CH_fve_44	11	104	0.0000112399
Fragaria vesca	scf0513158	5	CH_fve_55	11	104	0.000123091
Fragaria vesca	LG6	6	CH_fve_106	10	78	0.000680955
Glycine max	Gm02	4	CH_gma_85	10	108	0.000997106
Gossypium raimondii	Chr06	6	CH_gra_56	21	192	0.0000000215057
Medicago truncatula	chr8	1	CH_mtr_505	4	6	0.000382835
Medicago truncatula	chr8	2	CH_mtr_715	4	6	0.000947174
Solanum tuberosum	chr08	1	CH_stu_282	5	5	0.00000311755
Solanum tuberosum	chr08	2	CH_stu_328	5	5	0.00000760796
Solanum tuberosum	chr08	3	CH_stu_498	5	5	0.0000203168
Vitis vinifera	chr16	4	CH_vvi_68	10	44	0.0000012641
Vitis vinifera	chr16	5	CH_vvi_72	10	44	0.00000757015
Vitis vinifera	chr4	6	CH_vvi_72	10	21	0.00000000664699
Zea mays	10	1	CH_zma_163	4	4	0.000117992

Available child term results

GO term	Description	Number of clusters
GO:0003855	3-dehydroquinate dehydratase activity	17
GO:0003856	3-dehydroquinate synthase activity	3
GO:0003861	3-isopropylmalate dehydratase activity	1
GO:0003904	deoxyribodipyrimidine photo-lyase activity	3
GO:0003994	aconitate hydratase activity	24
GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	10
GO:0004056	argininosuccinate lyase activity	2
GO:0004058	aromatic-L-amino-acid decarboxylase activity	1
GO:0004089	carbonate dehydratase activity	25
GO:0004107	chorismate synthase activity	6
GO:0004124	cysteine synthase activity	29
GO:0004150	dihydroneopterin aldolase activity	12
GO:0004160	dihydroxy-acid dehydratase activity	5
GO:0004163	diphosphomevalonate decarboxylase activity	3
GO:0004300	enoyl-CoA hydratase activity	4
GO:0004332	fructose-bisphosphate aldolase activity	14
GO:0004351	glutamate decarboxylase activity	31
GO:0004383	guanylate cyclase activity	2
GO:0004397	histidine ammonia-lyase activity	3
GO:0004408	holocytochrome-c synthase activity	6
GO:0004419	hydroxymethylglutaryl-CoA lyase activity	4
GO:0004424	imidazoleglycerol-phosphate dehydratase activity	6
GO:0004425	indole-3-glycerol-phosphate synthase activity	18
GO:0004451	isocitrate lyase activity	6
GO:0004462	lactoylglutathione lyase activity	10
GO:0004586	ornithine decarboxylase activity	3
GO:0004590	orotidine-5'-phosphate decarboxylase activity	2
GO:0004609	phosphatidylserine decarboxylase activity	14
GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	7
GO:0004634	phosphopyruvate hydratase activity	6
GO:0004638	phosphoribosylaminoimidazole carboxylase activity	9
GO:0004655	porphobilinogen synthase activity	6
GO:0004664	prephenate dehydratase activity	1
GO:0004737	pyruvate decarboxylase activity	3
GO:0004794	L-threonine ammonia-lyase activity	9
GO:0004834	tryptophan synthase activity	25
GO:0004852	uroporphyrinogen-III synthase activity	3
GO:0004853	uroporphyrinogen decarboxylase activity	11
GO:0008446	GDP-mannose 4,6-dehydratase activity	5
GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity	1
GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2
GO:0008792	arginine decarboxylase activity	1
GO:0008836	diaminopimelate decarboxylase activity	1
GO:0008840	4-hydroxy-tetrahydrodipicolinate synthase	2
GO:0008935	1,4-dihydroxy-2-naphthoyl-CoA synthase activity	3
GO:0008964	phosphoenolpyruvate carboxylase activity	12
GO:0009899	ent-kaurene synthase activity	6
GO:0009924	octadecanal decarbonylase activity	2
GO:0009978	allene oxide synthase activity	6
GO:0010333	terpene synthase activity	287
GO:0016508	long-chain-enoyl-CoA hydratase activity	2
GO:0016831	carboxy-lyase activity	22
GO:0016833	oxo-acid-lyase activity	7
GO:0016835	carbon-oxygen lyase activity	15
GO:0016836	hydro-lyase activity	5
GO:0016838	carbon-oxygen lyase activity, acting on phosphates	6
GO:0016840	carbon-nitrogen lyase activity	3
GO:0016841	ammonia-lyase activity	29
GO:0016844	strictosidine synthase activity	105
GO:0016846	carbon-sulfur lyase activity	37
GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity	4
GO:0016849	phosphorus-oxygen lyase activity	12
GO:0016984	ribulose-bisphosphate carboxylase activity	25
GO:0030570	pectate lyase activity	20
GO:0033984	indole-3-glycerol-phosphate lyase activity	2
GO:0034007	S-linalool synthase activity	13
GO:0047434	indolepyruvate decarboxylase activity	1
GO:0047461	(+)-delta-cadinene synthase activity	15
GO:0047987	hydroperoxide dehydratase activity	3
GO:0048040	UDP-glucuronate decarboxylase activity	1
GO:0050080	malonyl-CoA decarboxylase activity	6
GO:0050551	myrcene synthase activity	1
GO:0051266	sirohydrochlorin ferrochelatase activity	2
GO:0052578	alpha-farnesene synthase activity	7
GO:0052684	L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	2
GO:0071771	aldehyde decarbonylase activity	43
GO:0080013	(E,E)-geranyllinalool synthase activity	16
GO:0080016	(-)-E-beta-caryophyllene synthase activity	2
GO:0080108	S-alkylthiohydroximate lyase activity	10
GO:0080109	indole-3-acetonitrile nitrile hydratase activity	6

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V