PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016817
Description: hydrolase activity, acting on acid anhydrides

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00019	3	CH_atr_129	8	9	0.000000219973
Citrullus lanatus	Chr9	6	CH_cla_46	24	164	0.000052877
Populus trichocarpa	Chr12	1	CH_ptr_137	10	14	0.0000000260135
Populus trichocarpa	Chr12	2	CH_ptr_162	10	14	0.0000000416581
Populus trichocarpa	Chr12	3	CH_ptr_133	12	15	0.000000000108231
Populus trichocarpa	Chr12	4	CH_ptr_65	10	14	0.0000000260135
Populus trichocarpa	Chr12	5	CH_ptr_66	10	14	0.0000000416581
Populus trichocarpa	Chr12	6	CH_ptr_73	12	15	0.000000000108231
Prunus persica	scaffold_4	1	CH_ppe_58	11	12	0.00000000000500845
Prunus persica	scaffold_4	2	CH_ppe_75	11	12	0.00000000000876313
Prunus persica	scaffold_4	3	CH_ppe_97	11	12	0.0000000000176475
Prunus persica	scaffold_4	4	CH_ppe_41	11	12	0.00000000000500845
Prunus persica	scaffold_4	5	CH_ppe_41	11	12	0.00000000000876313
Prunus persica	scaffold_4	6	CH_ppe_57	11	12	0.0000000000176475

Available child term results

GO term	Description	Number of clusters
GO:0003678	DNA helicase activity	4
GO:0003689	DNA clamp loader activity	5
GO:0003724	RNA helicase activity	8
GO:0003777	microtubule motor activity	7
GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	6
GO:0003924	GTPase activity	35
GO:0003998	acylphosphatase activity	6
GO:0004003	ATP-dependent DNA helicase activity	4
GO:0004004	ATP-dependent RNA helicase activity	2
GO:0004008	copper-exporting ATPase activity	1
GO:0004012	phospholipid-translocating ATPase activity	20
GO:0004176	ATP-dependent peptidase activity	8
GO:0004382	guanosine-diphosphatase activity	2
GO:0004386	helicase activity	33
GO:0004427	inorganic diphosphatase activity	3
GO:0005388	calcium-transporting ATPase activity	31
GO:0008026	ATP-dependent helicase activity	20
GO:0008094	DNA-dependent ATPase activity	3
GO:0008413	8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity	2
GO:0008551	cadmium-exporting ATPase activity	3
GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	10
GO:0008559	xenobiotic-transporting ATPase activity	6
GO:0008574	plus-end-directed microtubule motor activity	4
GO:0009378	four-way junction helicase activity	10
GO:0009678	hydrogen-translocating pyrophosphatase activity	10
GO:0010945	CoA pyrophosphatase activity	6
GO:0015415	phosphate ion transmembrane-transporting ATPase activity	5
GO:0015446	arsenite-transmembrane transporting ATPase activity	16
GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6
GO:0016462	pyrophosphatase activity	5
GO:0016887	ATPase activity	102
GO:0017111	nucleoside-triphosphatase activity	54
GO:0019829	cation-transporting ATPase activity	17
GO:0042623	ATPase activity, coupled	10
GO:0042626	ATPase activity, coupled to transmembrane movement of substances	94
GO:0043138	3'-5' DNA helicase activity	4
GO:0043139	5'-3' DNA helicase activity	4
GO:0043141	ATP-dependent 5'-3' DNA helicase activity	14
GO:0043142	single-stranded DNA-dependent ATPase activity	7
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0046961	proton-transporting ATPase activity, rotational mechanism	3
GO:0047429	nucleoside-triphosphate diphosphatase activity	5
GO:0047631	ADP-ribose diphosphatase activity	2
GO:0080042	ADP-glucose pyrophosphohydrolase activity	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V