PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	1	CH_aly_102	5	10	0.000000917627
Arabidopsis lyrata	scaffold_7	2	CH_aly_139	5	10	0.0000013053
Arabidopsis lyrata	scaffold_7	3	CH_aly_189	5	10	0.00000415622
Eucalyptus grandis	scaffold_8	1	CH_egr_247	5	7	0.00000000430223
Zea mays	2	1	CH_zma_189	3	3	0.000207682
Zea mays	2	2	CH_zma_199	3	3	0.000256188
Zea mays	2	3	CH_zma_245	6	51	0.000159785

GO term	Description	Number of clusters
GO:0003860	3-hydroxyisobutyryl-CoA hydrolase activity	5
GO:0003986	acetyl-CoA hydrolase activity	3
GO:0004221	ubiquitin thiolesterase activity	49
GO:0004416	hydroxyacylglutathione hydrolase activity	4
GO:0008474	palmitoyl-(protein) hydrolase activity	34
GO:0016289	CoA hydrolase activity	4
GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity	2
GO:0018738	S-formylglutathione hydrolase activity	6
GO:0047617	acyl-CoA hydrolase activity	29

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V