PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016772
Description: transferase activity, transferring phosphorus-containing groups

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	1	CH_atr_164	17	78	0.000139071
Amborella trichopoda	scaffold00068	1	CH_atr_128	9	15	0.0000187051
Amborella trichopoda	scaffold00068	2	CH_atr_134	9	15	0.0000259679
Amborella trichopoda	scaffold00068	3	CH_atr_182	10	15	0.00000513498
Amborella trichopoda	scaffold00022	4	CH_atr_32	33	218	0.000000473022
Amborella trichopoda	scaffold00022	5	CH_atr_35	33	218	0.00000125567
Amborella trichopoda	scaffold00068	6	CH_atr_58	10	15	0.00000513498
Arabidopsis lyrata	scaffold_5	4	CH_aly_19	13	26	0.00000141972
Arabidopsis lyrata	scaffold_5	5	CH_aly_33	13	26	0.00000209754
Arabidopsis lyrata	scaffold_5	6	CH_aly_37	14	26	0.000000742849
Arabidopsis thaliana	3	4	CH_ath_48	13	28	0.00000390337
Arabidopsis thaliana	3	5	CH_ath_62	13	28	0.00000421614
Brassica rapa	A03	1	CH_bra_28	12	14	0.00000000309987
Brassica rapa	A03	2	CH_bra_45	12	14	0.0000000049369
Brassica rapa	A03	4	CH_bra_7	12	14	0.00000000309987
Brassica rapa	A06	4	CH_bra_15	10	17	0.000164141
Brassica rapa	A09	4	CH_bra_19	12	28	0.000495144
Brassica rapa	A03	5	CH_bra_12	12	14	0.0000000049369
Brassica rapa	A09	5	CH_bra_37	12	28	0.000765052
Capsella rubella	scaffold_5	4	CH_cru_31	12	22	0.000011041
Capsella rubella	scaffold_5	5	CH_cru_54	12	22	0.0000166062
Capsella rubella	scaffold_5	6	CH_cru_84	12	22	0.0000491954
Chlamydomonas reinhardtii	chromosome_11	1	CH_cre_70	6	6	0.000744499
Chlamydomonas reinhardtii	chromosome_11	2	CH_cre_79	6	6	0.000848439
Chlamydomonas reinhardtii	chromosome_9	4	CH_cre_12	13	31	0.000133987
Chlamydomonas reinhardtii	chromosome_9	5	CH_cre_15	13	31	0.000173988
Citrullus lanatus	Chr1	1	CH_cla_54	11	13	0.00000000549573
Citrullus lanatus	Chr1	2	CH_cla_58	11	13	0.0000000086406
Citrullus lanatus	Chr1	4	CH_cla_15	11	13	0.00000000549573
Citrullus lanatus	Chr1	5	CH_cla_15	11	13	0.0000000086406
Citrus sinensis	scaffold00103	4	CH_csi_21	10	15	0.0000323292
Citrus sinensis	scaffold00103	6	CH_csi_20	12	15	0.000000150527
Cucumis melo	CM3.5_scaffold00067	1	CH_cme_51	19	46	0.000000000665619
Cucumis melo	CM3.5_scaffold00067	2	CH_cme_41	20	46	0.0000000000955975
Cucumis melo	CM3.5_scaffold00067	4	CH_cme_17	19	46	0.000000000665619
Cucumis melo	CM3.5_scaffold00007	5	CH_cme_24	38	247	0.00000254236
Cucumis melo	CM3.5_scaffold00067	5	CH_cme_14	20	46	0.0000000000955975
Eucalyptus grandis	scaffold_3	2	CH_egr_792	23	79	0.000880637
Eucalyptus grandis	scaffold_11	5	CH_egr_184	61	298	0.000000171939
Glycine max	Gm13	1	CH_gma_78	16	25	0.00000000176848
Glycine max	Gm13	2	CH_gma_103	16	25	0.00000000275391
Glycine max	Gm13	4	CH_gma_33	16	25	0.00000000176848
Glycine max	Gm13	5	CH_gma_37	16	25	0.00000000275391
Glycine max	Gm08	6	CH_gma_80	15	31	0.0000221924
Gossypium raimondii	Chr11	1	CH_gra_103	12	15	0.0000000297813
Gossypium raimondii	Chr10	2	CH_gra_278	15	40	0.00022519
Gossypium raimondii	Chr11	2	CH_gra_117	12	15	0.0000000407261
Gossypium raimondii	Chr07	4	CH_gra_72	33	177	0.000203039
Gossypium raimondii	Chr11	4	CH_gra_51	12	15	0.0000000297813
Gossypium raimondii	Chr07	5	CH_gra_81	33	177	0.000385729
Gossypium raimondii	Chr10	5	CH_gra_79	15	40	0.00022519
Gossypium raimondii	Chr11	5	CH_gra_51	12	15	0.0000000407261
Gossypium raimondii	Chr07	6	CH_gra_73	38	176	0.00000581282
Lotus japonicus	chr1	3	CH_lja_193	6	7	0.000440725
Malus domestica	5	1	CH_mdo_99	19	72	0.00000629499
Malus domestica	5	2	CH_mdo_86	20	72	0.0000012188
Malus domestica	5	4	CH_mdo_10	27	117	0.0000000302119
Medicago truncatula	chr4	1	CH_mtr_512	13	51	0.00042906
Medicago truncatula	chr4	2	CH_mtr_660	13	51	0.000587485
Medicago truncatula	chr4	3	CH_mtr_896	14	52	0.000982044
Medicago truncatula	chr4	4	CH_mtr_191	13	51	0.00042906
Medicago truncatula	chr4	5	CH_mtr_220	13	51	0.000587485
Medicago truncatula	chr4	6	CH_mtr_280	14	52	0.000982044
Prunus persica	scaffold_3	1	CH_ppe_102	19	39	0.00000000443149
Prunus persica	scaffold_3	2	CH_ppe_121	19	39	0.00000000672625
Prunus persica	scaffold_3	4	CH_ppe_54	19	39	0.00000000443149
Prunus persica	scaffold_3	5	CH_ppe_56	19	39	0.00000000672625
Ricinus communis	30026	1	CH_rco_182	6	6	0.000493457
Ricinus communis	30026	2	CH_rco_227	6	6	0.000608698
Ricinus communis	30128	5	CH_rco_27	10	17	0.0000781133
Solanum lycopersicum	ch08	3	CH_sly_590	14	37	0.000571725
Solanum lycopersicum	ch07	5	CH_sly_129	10	20	0.000870587
Solanum lycopersicum	ch08	6	CH_sly_166	14	37	0.000571725
Solanum tuberosum	chr03	4	CH_stu_162	43	294	0.000747858
Solanum tuberosum	chr03	6	CH_stu_142	55	294	0.000000613491
Thellungiella parvula	ch1-2	1	CH_tpa_79	10	16	0.0000296343
Thellungiella parvula	ch1-2	4	CH_tpa_12	10	16	0.0000296343
Theobroma cacao	scaffold_7	1	CH_tca_148	14	27	0.00000105342
Theobroma cacao	scaffold_7	2	CH_tca_158	14	27	0.00000147723
Vitis vinifera	chr9	1	CH_vvi_51	21	34	0.0000000000000410205
Vitis vinifera	chr11	4	CH_vvi_98	10	19	0.000395898
Vitis vinifera	chr9	4	CH_vvi_33	21	34	0.0000000000000410205
Vitis vinifera	chr11	5	CH_vvi_103	10	19	0.000538275
Vitis vinifera	chr12	6	CH_vvi_119	48	284	0.000105021
Zea mays	3	1	CH_zma_217	6	6	0.000668121
Zea mays	5	1	CH_zma_218	6	6	0.000668121
Zea mays	3	2	CH_zma_243	6	6	0.00076738
Zea mays	5	2	CH_zma_244	6	6	0.00076738
Zea mays	5	3	CH_zma_296	19	70	0.000467561
Zea mays	5	4	CH_zma_34	27	149	0.000310295
Zea mays	5	5	CH_zma_39	27	149	0.00050225
Zea mays	5	6	CH_zma_47	29	149	0.000363487

Available child term results

GO term	Description	Number of clusters
GO:0000155	phosphorelay sensor kinase activity	4
GO:0000823	inositol-1,4,5-trisphosphate 6-kinase activity	4
GO:0003721	telomeric template RNA reverse transcriptase activity	4
GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	3
GO:0003872	6-phosphofructokinase activity	2
GO:0003873	6-phosphofructo-2-kinase activity	3
GO:0003887	DNA-directed DNA polymerase activity	19
GO:0003896	DNA primase activity	4
GO:0003899	DNA-directed RNA polymerase activity	70
GO:0003919	FMN adenylyltransferase activity	5
GO:0003964	RNA-directed DNA polymerase activity	66
GO:0003968	RNA-directed RNA polymerase activity	47
GO:0004001	adenosine kinase activity	5
GO:0004017	adenylate kinase activity	1
GO:0004072	aspartate kinase activity	3
GO:0004140	dephospho-CoA kinase activity	9
GO:0004142	diacylglycerol cholinephosphotransferase activity	7
GO:0004143	diacylglycerol kinase activity	7
GO:0004370	glycerol kinase activity	6
GO:0004371	glycerone kinase activity	10
GO:0004385	guanylate kinase activity	4
GO:0004413	homoserine kinase activity	5
GO:0004417	hydroxyethylthiazole kinase activity	1
GO:0004430	1-phosphatidylinositol 4-kinase activity	4
GO:0004475	mannose-1-phosphate guanylyltransferase activity	2
GO:0004484	mRNA guanylyltransferase activity	2
GO:0004550	nucleoside diphosphate kinase activity	1
GO:0004594	pantothenate kinase activity	5
GO:0004618	phosphoglycerate kinase activity	35
GO:0004654	polyribonucleotide nucleotidyltransferase activity	13
GO:0004672	protein kinase activity	32
GO:0004674	protein serine/threonine kinase activity	416
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	5
GO:0004683	calmodulin-dependent protein kinase activity	6
GO:0004693	cyclin-dependent protein serine/threonine kinase activity	4
GO:0004707	MAP kinase activity	4
GO:0004709	MAP kinase kinase kinase activity	4
GO:0004713	protein tyrosine kinase activity	157
GO:0004743	pyruvate kinase activity	1
GO:0004747	ribokinase activity	3
GO:0004749	ribose phosphate diphosphokinase activity	3
GO:0004765	shikimate kinase activity	5
GO:0004780	sulfate adenylyltransferase (ADP) activity	2
GO:0004781	sulfate adenylyltransferase (ATP) activity	10
GO:0004797	thymidine kinase activity	3
GO:0004849	uridine kinase activity	3
GO:0004856	xylulokinase activity	4
GO:0008108	UDP-glucose:hexose-1-phosphate uridylyltransferase activity	2
GO:0008193	tRNA guanylyltransferase activity	12
GO:0008440	inositol-1,4,5-trisphosphate 3-kinase activity	2
GO:0008444	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	1
GO:0008478	pyridoxal kinase activity	3
GO:0008481	sphinganine kinase activity	9
GO:0008531	riboflavin kinase activity	6
GO:0008690	3-deoxy-manno-octulosonate cytidylyltransferase activity	4
GO:0008728	GTP diphosphokinase activity	2
GO:0008897	holo-[acyl-carrier-protein] synthase activity	5
GO:0008928	mannose-1-phosphate guanylyltransferase (GDP) activity	2
GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity	6
GO:0008972	phosphomethylpyrimidine kinase activity	4
GO:0009022	tRNA nucleotidyltransferase activity	4
GO:0009927	histidine phosphotransfer kinase activity	2
GO:0016301	kinase activity	16
GO:0016307	phosphatidylinositol phosphate kinase activity	6
GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	2
GO:0016773	phosphotransferase activity, alcohol group as acceptor	40
GO:0016779	nucleotidyltransferase activity	16
GO:0016780	phosphotransferase activity, for other substituted phosphate groups	1
GO:0017103	UTP:galactose-1-phosphate uridylyltransferase activity	4
GO:0019200	carbohydrate kinase activity	1
GO:0019201	nucleotide kinase activity	1
GO:0019205	nucleobase-containing compound kinase activity	5
GO:0032942	inositol tetrakisphosphate 2-kinase activity	1
GO:0033862	UMP kinase activity	5
GO:0034061	DNA polymerase activity	2
GO:0035299	inositol pentakisphosphate 2-kinase activity	9
GO:0042736	NADH kinase activity	1
GO:0046522	S-methyl-5-thioribose kinase activity	18
GO:0047325	inositol tetrakisphosphate 1-kinase activity	1
GO:0047334	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	4
GO:0047912	galacturonokinase activity	2
GO:0047940	glucuronokinase activity	2
GO:0050242	pyruvate, phosphate dikinase activity	15
GO:0050521	alpha-glucan, water dikinase activity	4
GO:0052669	CTP:2-trans,-6-trans-farnesol kinase activity	6

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V