PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016757
Description: transferase activity, transferring glycosyl groups

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00039	3	CH_atr_269	10	42	0.00020724
Amborella trichopoda	scaffold00039	6	CH_atr_77	10	42	0.00020724
Arabidopsis lyrata	scaffold_4	3	CH_aly_304	6	10	0.000224777
Arabidopsis thaliana	3	1	CH_ath_252	6	9	0.0000931804
Beta vulgaris	Bvchr6.sca028	1	CH_bvu_136	5	5	0.0000361869
Beta vulgaris	Bvchr6.sca028	2	CH_bvu_166	5	5	0.0000490395
Beta vulgaris	Bvchr6.sca028	3	CH_bvu_210	5	5	0.000059959
Brassica rapa	A10	3	CH_bra_224	5	5	0.000115148
Capsella rubella	scaffold_7	1	CH_cru_102	11	41	0.00000138855
Capsella rubella	scaffold_7	4	CH_cru_26	11	41	0.00000138855
Citrullus lanatus	Chr9	1	CH_cla_216	7	21	0.000903873
Eucalyptus grandis	scaffold_1	1	CH_egr_191	11	16	0.0000000000385115
Eucalyptus grandis	scaffold_17	1	CH_egr_187	10	12	0.0000000000301183
Eucalyptus grandis	scaffold_1	2	CH_egr_249	11	16	0.0000000000836542
Eucalyptus grandis	scaffold_17	2	CH_egr_245	10	12	0.0000000000611601
Eucalyptus grandis	scaffold_1	3	CH_egr_306	11	16	0.00000000014659
Eucalyptus grandis	scaffold_17	3	CH_egr_292	10	12	0.000000000102096
Eucalyptus grandis	scaffold_1	4	CH_egr_121	11	16	0.0000000000385115
Eucalyptus grandis	scaffold_17	4	CH_egr_119	10	12	0.0000000000301183
Eucalyptus grandis	scaffold_9	4	CH_egr_227	10	40	0.000228759
Eucalyptus grandis	scaffold_1	5	CH_egr_131	11	16	0.0000000000836542
Eucalyptus grandis	scaffold_17	5	CH_egr_129	10	12	0.0000000000611601
Eucalyptus grandis	scaffold_9	5	CH_egr_277	10	40	0.000446656
Eucalyptus grandis	scaffold_1	6	CH_egr_160	11	16	0.00000000014659
Eucalyptus grandis	scaffold_17	6	CH_egr_155	10	12	0.000000000102096
Eucalyptus grandis	scaffold_9	6	CH_egr_315	10	40	0.000723424
Fragaria vesca	LG6	6	CH_fve_13	32	208	3.15628e-16
Glycine max	Gm19	1	CH_gma_219	8	19	0.000022453
Glycine max	Gm19	2	CH_gma_288	8	19	0.0000454993
Glycine max	Gm09	3	CH_gma_499	7	15	0.000438475
Glycine max	Gm19	3	CH_gma_368	8	19	0.000098767
Glycine max	Gm19	4	CH_gma_53	17	135	0.00000882714
Glycine max	Gm17	5	CH_gma_95	10	48	0.000839602
Glycine max	Gm19	5	CH_gma_66	17	135	0.000034474
Glycine max	Gm19	6	CH_gma_96	17	135	0.000151127
Lotus japonicus	chr4	6	CH_lja_19	10	59	0.0000141183
Medicago truncatula	chr1	1	CH_mtr_537	4	5	0.000577666
Medicago truncatula	chr4	1	CH_mtr_241	7	11	0.000000165551
Medicago truncatula	chr4	2	CH_mtr_290	7	11	0.000000305421
Medicago truncatula	chr4	3	CH_mtr_389	7	11	0.000000757173
Oryza sativa ssp. japonica	1	5	CH_osa_157	10	67	0.000333695
Oryza sativa ssp. japonica	1	6	CH_osa_189	10	67	0.000952389
Solanum lycopersicum	ch11	3	CH_sly_274	7	9	0.00000154863
Solanum lycopersicum	ch04	4	CH_sly_99	11	61	0.000298604
Solanum lycopersicum	ch04	5	CH_sly_114	11	61	0.000428748
Solanum tuberosum	chr04	1	CH_stu_96	12	17	0.000000000000296219
Solanum tuberosum	chr10	1	CH_stu_277	8	15	0.00000268546
Solanum tuberosum	chr10	2	CH_stu_318	8	15	0.00000516226
Solanum tuberosum	chr08	3	CH_stu_150	12	16	0.00000000000079014
Solanum tuberosum	chr09	3	CH_stu_637	5	5	0.000188385
Solanum tuberosum	chr04	4	CH_stu_146	10	43	0.000172957
Solanum tuberosum	chr04	4	CH_stu_65	12	17	0.000000000000296219
Solanum tuberosum	chr04	5	CH_stu_171	10	43	0.000378162
Solanum tuberosum	chr10	5	CH_stu_134	14	79	0.0000205633
Solanum tuberosum	chr04	6	CH_stu_237	10	43	0.000965591
Solanum tuberosum	chr08	6	CH_stu_85	12	16	0.00000000000079014
Thellungiella parvula	ch1-1	7	CH_tpa_6	7	29	0.000813201
Theobroma cacao	scaffold_2	3	CH_tca_453	6	12	0.000933007
Theobroma cacao	scaffold_1	4	CH_tca_38	10	22	0.0000000161605
Theobroma cacao	scaffold_1	5	CH_tca_40	10	22	0.0000000370126
Theobroma cacao	scaffold_1	6	CH_tca_61	10	22	0.0000000638855
Vitis vinifera	chr14	1	CH_vvi_159	7	10	0.000000989718
Vitis vinifera	chr14	2	CH_vvi_183	7	10	0.00000192863
Vitis vinifera	chr14	3	CH_vvi_258	7	10	0.00000554768
Zea mays	3	1	CH_zma_146	6	9	0.0000580619
Zea mays	3	2	CH_zma_158	6	9	0.0000945617
Zea mays	3	3	CH_zma_164	7	11	0.0000145567

Available child term results

GO term	Description	Number of clusters
GO:0000107	imidazoleglycerol-phosphate synthase activity	2
GO:0003827	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	2
GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	9
GO:0003843	1,3-beta-D-glucan synthase activity	57
GO:0003879	ATP phosphoribosyltransferase activity	4
GO:0003950	NAD+ ADP-ribosyltransferase activity	6
GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	19
GO:0004044	amidophosphoribosyltransferase activity	6
GO:0004134	4-alpha-glucanotransferase activity	10
GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity	7
GO:0004516	nicotinate phosphoribosyltransferase activity	2
GO:0004588	orotate phosphoribosyltransferase activity	5
GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	51
GO:0008184	glycogen phosphorylase activity	9
GO:0008194	UDP-glycosyltransferase activity	5
GO:0008373	sialyltransferase activity	11
GO:0008375	acetylglucosaminyltransferase activity	23
GO:0008378	galactosyltransferase activity	21
GO:0008466	glycogenin glucosyltransferase activity	4
GO:0008479	queuine tRNA-ribosyltransferase activity	1
GO:0008915	lipid-A-disaccharide synthase activity	3
GO:0009011	starch synthase activity	1
GO:0010294	abscisic acid glucosyltransferase activity	2
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	2
GO:0015020	glucuronosyltransferase activity	6
GO:0016157	sucrose synthase activity	7
GO:0016758	transferase activity, transferring hexosyl groups	703
GO:0016760	cellulose synthase (UDP-forming) activity	164
GO:0016762	xyloglucan:xyloglucosyl transferase activity	166
GO:0033164	glycolipid 6-alpha-mannosyltransferase activity	7
GO:0033843	xyloglucan 6-xylosyltransferase activity	2
GO:0035251	UDP-glucosyltransferase activity	27
GO:0046481	digalactosyldiacylglycerol synthase activity	2
GO:0046524	sucrose-phosphate synthase activity	1
GO:0046527	glucosyltransferase activity	1
GO:0047209	coniferyl-alcohol glucosyltransferase activity	9
GO:0047215	indole-3-acetate beta-glucosyltransferase activity	9
GO:0047216	inositol 3-alpha-galactosyltransferase activity	10
GO:0047251	thiohydroximate beta-D-glucosyltransferase activity	3
GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	2
GO:0047807	cytokinin 7-beta-glucosyltransferase activity	4
GO:0050004	isoflavone 7-O-glucosyltransferase activity	8
GO:0050284	sinapate 1-glucosyltransferase activity	19
GO:0050306	sucrose 1F-fructosyltransferase activity	4
GO:0050403	trans-zeatin O-beta-D-glucosyltransferase activity	42
GO:0050511	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity	3
GO:0050513	glycoprotein 2-beta-D-xylosyltransferase activity	6
GO:0051507	beta-sitosterol UDP-glucosyltransferase activity	2
GO:0051753	mannan synthase activity	6
GO:0052638	indole-3-butyrate beta-glucosyltransferase activity	5
GO:0052639	salicylic acid glucosyltransferase (ester-forming) activity	4
GO:0052640	salicylic acid glucosyltransferase (glucoside-forming) activity	1
GO:0080002	UDP-glucose:4-aminobenzoate acylglucosyltransferase activity	13
GO:0080018	anthocyanin 5-O-glucosyltransferase activity	3
GO:0080043	quercetin 3-O-glucosyltransferase activity	8
GO:0080044	quercetin 7-O-glucosyltransferase activity	13
GO:0080045	quercetin 3'-O-glucosyltransferase activity	33
GO:0080116	glucuronoxylan glucuronosyltransferase activity	3

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V