PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016705
Description: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00001	1	CH_atr_111	9	30	0.00000492319
Amborella trichopoda	scaffold00181	1	CH_atr_7	23	31	1.73042e-32
Amborella trichopoda	scaffold00001	2	CH_atr_117	9	30	0.00000646077
Amborella trichopoda	scaffold00181	2	CH_atr_6	23	31	3.5804e-32
Amborella trichopoda	scaffold00181	3	CH_atr_10	25	32	8.71391e-35
Amborella trichopoda	scaffold00181	4	CH_atr_6	23	31	1.73042e-32
Amborella trichopoda	scaffold00181	5	CH_atr_6	23	31	3.5804e-32
Amborella trichopoda	scaffold00001	6	CH_atr_37	11	21	0.000000000155742
Amborella trichopoda	scaffold00181	6	CH_atr_10	25	32	8.71391e-35
Arabidopsis lyrata	scaffold_1	4	CH_aly_44	16	207	0.000894548
Arabidopsis thaliana	1	4	CH_ath_112	16	188	0.000444649
Beta vulgaris	Bvchr1_un.sca002	1	CH_bvu_39	11	24	0.000000000247815
Beta vulgaris	Bvchr1_un.sca002	2	CH_bvu_47	11	24	0.000000000296549
Beta vulgaris	Bvchr1_un.sca002	3	CH_bvu_38	12	24	0.0000000000082889
Beta vulgaris	Bvchr1_un.sca002	4	CH_bvu_11	11	24	0.000000000247815
Beta vulgaris	Bvchr5.sca024	4	CH_bvu_19	11	50	0.00000263859
Beta vulgaris	Bvchr1_un.sca002	5	CH_bvu_12	11	24	0.000000000296549
Beta vulgaris	Bvchr5.sca024	5	CH_bvu_25	11	50	0.00000313919
Beta vulgaris	Bvchr1_un.sca002	6	CH_bvu_15	12	24	0.0000000000082889
Beta vulgaris	Bvchr5.sca024	6	CH_bvu_34	11	50	0.00000519469
Brassica rapa	A09	4	CH_bra_22	16	167	0.000642689
Capsella rubella	scaffold_4	1	CH_cru_214	6	12	0.000508018
Capsella rubella	scaffold_4	2	CH_cru_317	6	12	0.000660083
Capsella rubella	scaffold_4	3	CH_cru_366	6	12	0.00069461
Carica papaya	supercontig_85	4	CH_cpa_14	10	41	0.00000125769
Carica papaya	supercontig_85	5	CH_cpa_14	10	41	0.00000182927
Carica papaya	supercontig_85	6	CH_cpa_27	10	41	0.00000552949
Chlamydomonas reinhardtii	chromosome_10	1	CH_cre_20	10	51	0.000000537318
Chlamydomonas reinhardtii	chromosome_9	1	CH_cre_22	6	9	0.000000804245
Chlamydomonas reinhardtii	chromosome_10	2	CH_cre_23	10	51	0.000000864545
Chlamydomonas reinhardtii	chromosome_9	2	CH_cre_24	6	9	0.00000107558
Chlamydomonas reinhardtii	chromosome_9	3	CH_cre_32	8	13	0.000000145067
Chlamydomonas reinhardtii	chromosome_10	4	CH_cre_7	15	145	0.0000000890998
Chlamydomonas reinhardtii	chromosome_10	5	CH_cre_7	16	145	0.0000000129239
Chlamydomonas reinhardtii	chromosome_10	6	CH_cre_23	17	145	0.00000885767
Citrullus lanatus	Chr7	1	CH_cla_111	5	5	0.0000203945
Citrullus lanatus	Chr9	1	CH_cla_112	5	5	0.0000203945
Citrullus lanatus	Chr7	2	CH_cla_123	5	5	0.0000236873
Citrullus lanatus	Chr9	2	CH_cla_124	5	5	0.0000236873
Citrullus lanatus	Chr7	3	CH_cla_161	5	5	0.0000292227
Citrus sinensis	scaffold00168	1	CH_csi_50	10	24	0.000000134068
Citrus sinensis	scaffold00168	2	CH_csi_52	10	24	0.000000197361
Citrus sinensis	scaffold00168	3	CH_csi_74	10	24	0.000000278251
Citrus sinensis	scaffold00043	4	CH_csi_13	13	48	0.0000000559103
Citrus sinensis	scaffold00168	4	CH_csi_14	10	24	0.000000134068
Citrus sinensis	scaffold00043	5	CH_csi_13	13	48	0.0000000915276
Citrus sinensis	scaffold00168	5	CH_csi_15	10	24	0.000000197361
Citrus sinensis	scaffold00043	6	CH_csi_18	13	48	0.000000141736
Citrus sinensis	scaffold00168	6	CH_csi_21	10	24	0.000000278251
Cucumis melo	CM3.5_scaffold00029	4	CH_cme_38	12	119	0.000640544
Cucumis melo	CM3.5_scaffold00029	5	CH_cme_51	12	119	0.000931682
Eucalyptus grandis	scaffold_11	4	CH_egr_139	12	26	0.00000000991113
Eucalyptus grandis	scaffold_11	4	CH_egr_226	11	44	0.000214465
Eucalyptus grandis	scaffold_11	5	CH_egr_159	12	26	0.0000000118847
Eucalyptus grandis	scaffold_11	6	CH_egr_194	12	26	0.00000002069
Eucalyptus grandis	scaffold_11	6	CH_egr_303	11	44	0.000408669
Fragaria vesca	LG6	1	CH_fve_201	12	76	0.000151869
Fragaria vesca	LG3	2	CH_fve_278	6	11	0.000338034
Fragaria vesca	LG6	2	CH_fve_261	12	76	0.000200428
Fragaria vesca	LG3	3	CH_fve_389	6	11	0.000511722
Fragaria vesca	LG6	3	CH_fve_246	13	76	0.0000385851
Fragaria vesca	LG2	4	CH_fve_33	13	61	0.000000661928
Fragaria vesca	LG6	4	CH_fve_48	12	76	0.000151869
Fragaria vesca	LG2	5	CH_fve_34	13	61	0.000000901627
Fragaria vesca	LG6	5	CH_fve_60	12	76	0.000200428
Fragaria vesca	LG6	6	CH_fve_77	13	76	0.0000385851
Glycine max	Gm09	1	CH_gma_40	14	33	0.00000000000140175
Glycine max	Gm09	2	CH_gma_53	14	33	0.00000000000220801
Glycine max	Gm20	3	CH_gma_234	14	72	0.00000115836
Glycine max	Gm09	4	CH_gma_26	14	33	0.00000000000140175
Glycine max	Gm15	4	CH_gma_59	17	166	0.0000613999
Glycine max	Gm20	4	CH_gma_63	11	60	0.000108059
Glycine max	Gm09	5	CH_gma_27	14	33	0.00000000000220801
Glycine max	Gm15	5	CH_gma_72	17	166	0.000100277
Glycine max	Gm20	5	CH_gma_67	17	156	0.0000382529
Glycine max	Gm09	6	CH_gma_29	15	33	0.000000000000128753
Glycine max	Gm15	6	CH_gma_102	17	166	0.000287971
Glycine max	Gm20	6	CH_gma_61	19	136	0.000000155049
Gossypium raimondii	Chr13	1	CH_gra_141	12	49	0.00000246343
Gossypium raimondii	Chr13	4	CH_gra_57	12	49	0.00000246343
Gossypium raimondii	Chr06	5	CH_gra_53	10	21	0.0000000576998
Gossypium raimondii	Chr13	5	CH_gra_63	12	49	0.00000331264
Gossypium raimondii	Chr13	6	CH_gra_71	12	49	0.00000456095
Medicago truncatula	chr6	1	CH_mtr_578	7	27	0.00086151
Medicago truncatula	chr6	3	CH_mtr_578	8	27	0.0000540536
Medicago truncatula	chr1	4	CH_mtr_143	10	50	0.0000102431
Medicago truncatula	chr8	4	CH_mtr_186	16	224	0.000307053
Medicago truncatula	chr1	5	CH_mtr_150	10	50	0.0000133851
Medicago truncatula	chr3	5	CH_mtr_135	10	43	0.00000268155
Medicago truncatula	chr8	5	CH_mtr_212	16	224	0.000452442
Medicago truncatula	chr1	6	CH_mtr_54	34	297	6.75261e-18
Medicago truncatula	chr1	6	CH_mtr_189	10	50	0.0000285864
Medicago truncatula	chr3	6	CH_mtr_172	10	43	0.00000576075
Medicago truncatula	chr8	6	CH_mtr_240	18	258	0.000258987
Populus trichocarpa	Chr02	4	CH_ptr_103	17	170	0.000228984
Populus trichocarpa	Chr02	5	CH_ptr_114	17	170	0.00035084
Prunus persica	scaffold_1	1	CH_ppe_168	10	26	0.000000729735
Prunus persica	scaffold_1	3	CH_ppe_174	11	26	0.0000000436988
Prunus persica	scaffold_1	4	CH_ppe_70	10	26	0.000000729735
Prunus persica	scaffold_4	4	CH_ppe_73	10	28	0.00000174135
Prunus persica	scaffold_8	4	CH_ppe_84	12	57	0.000020815
Prunus persica	scaffold_1	5	CH_ppe_78	10	26	0.000000973902
Prunus persica	scaffold_4	5	CH_ppe_81	10	28	0.00000232153
Prunus persica	scaffold_8	5	CH_ppe_93	12	57	0.0000290388
Prunus persica	scaffold_1	6	CH_ppe_83	11	26	0.0000000436988
Prunus persica	scaffold_4	6	CH_ppe_111	10	28	0.00000345802
Prunus persica	scaffold_8	6	CH_ppe_127	12	57	0.0000460302
Solanum lycopersicum	ch06	4	CH_sly_79	12	69	0.0000200841
Solanum lycopersicum	ch06	5	CH_sly_84	12	69	0.0000218562
Solanum tuberosum	chr12	1	CH_stu_287	8	12	0.00000367379
Solanum tuberosum	chr12	2	CH_stu_313	8	12	0.00000417156
Solanum tuberosum	chr12	3	CH_stu_467	8	12	0.00000933587
Solanum tuberosum	chr06	4	CH_stu_132	28	275	0.000050554
Solanum tuberosum	chr06	5	CH_stu_146	28	275	0.0000718262
Solanum tuberosum	chr06	6	CH_stu_183	30	275	0.0000393022
Solanum tuberosum	chr10	12	CH_stu_8	12	154	0.000610602
Vitis vinifera	chr18	1	CH_vvi_293	5	6	0.000632252
Vitis vinifera	chr3	1	CH_vvi_20	26	57	2.43395e-24
Vitis vinifera	chr18	2	CH_vvi_346	5	6	0.000703088
Vitis vinifera	chr3	2	CH_vvi_19	26	57	4.22323e-24
Vitis vinifera	chr18	3	CH_vvi_478	5	6	0.000871033
Vitis vinifera	chr3	3	CH_vvi_24	26	57	1.28157e-23
Vitis vinifera	chr3	4	CH_vvi_19	26	57	2.43395e-24
Vitis vinifera	chr3	5	CH_vvi_19	26	57	4.22323e-24
Vitis vinifera	chr3	6	CH_vvi_26	26	57	1.28157e-23

Available child term results

GO term	Description	Number of clusters
GO:0000248	C-5 sterol desaturase activity	5
GO:0000249	C-22 sterol desaturase activity	17
GO:0000254	C-4 methylsterol oxidase activity	4
GO:0004499	N,N-dimethylaniline monooxygenase activity	82
GO:0004500	dopamine beta-monooxygenase activity	5
GO:0004506	squalene monooxygenase activity	48
GO:0004508	steroid 17-alpha-monooxygenase activity	3
GO:0004768	stearoyl-CoA 9-desaturase activity	5
GO:0008398	sterol 14-demethylase activity	2
GO:0009979	16:0 monogalactosyldiacylglycerol desaturase activity	1
GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	426
GO:0016707	gibberellin 3-beta-dioxygenase activity	9
GO:0016708	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor	3
GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3
GO:0016710	trans-cinnamate 4-monooxygenase activity	8
GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	55
GO:0016719	carotene 7,8-desaturase activity	3
GO:0042284	sphingolipid delta-4 desaturase activity	1
GO:0042389	omega-3 fatty acid desaturase activity	8
GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	45
GO:0045431	flavonol synthase activity	3
GO:0045486	naringenin 3-dioxygenase activity	4
GO:0045544	gibberellin 20-oxidase activity	2
GO:0050589	leucocyanidin oxygenase activity	3
GO:0051777	ent-kaurenoate oxidase activity	16
GO:0051920	peroxiredoxin activity	8
GO:0052631	sphingolipid delta-8 desaturase activity	10
GO:0052637	delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	9
GO:0072550	triferuloylspermidine meta-hydroxylase activity	3
GO:0080102	3-methylthiopropyl glucosinolate S-oxygenase activity	21
GO:0080133	midchain alkane hydroxylase activity	48
GO:0097007	4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	63

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V