PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016702
Description: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00022	1	CH_atr_42	5	7	0.000000000124948
Amborella trichopoda	scaffold00103	1	CH_atr_142	3	4	0.0000498217
Amborella trichopoda	scaffold00022	2	CH_atr_47	5	7	0.000000000728801
Amborella trichopoda	scaffold00103	2	CH_atr_178	3	4	0.000136846
Amborella trichopoda	scaffold00011	3	CH_atr_258	3	3	0.0000998879
Amborella trichopoda	scaffold00056	3	CH_atr_65	7	25	0.000000000203072
Carica papaya	supercontig_32	1	CH_cpa_80	3	3	0.0000250388
Carica papaya	supercontig_8	1	CH_cpa_115	3	4	0.000100078
Carica papaya	supercontig_32	2	CH_cpa_99	3	3	0.0000463169
Carica papaya	supercontig_8	2	CH_cpa_159	3	4	0.00018509
Citrullus lanatus	Chr2	1	CH_cla_4	11	13	1.17423e-26
Citrullus lanatus	Chr2	1	CH_cla_11	8	9	1.27358e-18
Citrullus lanatus	Chr2	2	CH_cla_7	11	13	4.64916e-25
Citrullus lanatus	Chr2	4	CH_cla_3	11	13	1.17423e-26
Citrullus lanatus	Chr2	5	CH_cla_5	11	13	4.64916e-25
Citrus sinensis	scaffold00101	1	CH_csi_25	5	5	0.0000000000454188
Cucumis melo	CM3.5_scaffold00003	1	CH_cme_11	9	12	1.02952e-20
Cucumis melo	CM3.5_scaffold00022	1	CH_cme_5	12	13	3.63424e-31
Cucumis melo	CM3.5_scaffold00003	2	CH_cme_10	9	12	1.63493e-19
Cucumis melo	CM3.5_scaffold00022	4	CH_cme_6	12	13	3.63424e-31
Eucalyptus grandis	scaffold_3	3	CH_egr_334	6	11	0.000000000526861
Fragaria vesca	LG7	1	CH_fve_146	4	15	0.0000178829
Fragaria vesca	LG2	3	CH_fve_125	5	10	0.0000000460782
Glycine max	Gm07	1	CH_gma_71	5	5	0.000000000461118
Glycine max	Gm08	1	CH_gma_27	7	7	9.97575e-16
Glycine max	Gm07	2	CH_gma_90	5	5	0.0000000011709
Glycine max	Gm08	2	CH_gma_34	7	7	0.00000000000000373232
Malus domestica	5	1	CH_mdo_37	4	4	0.0000000242687
Malus domestica	5	2	CH_mdo_52	4	4	0.0000000798792
Malus domestica	2	3	CH_mdo_226	3	3	0.000109366
Manihot esculenta	scaffold06407	1	CH_mes_19	5	5	0.0000000000258769
Manihot esculenta	scaffold06407	2	CH_mes_24	5	5	0.000000000169405
Manihot esculenta	scaffold02871	3	CH_mes_42	5	6	0.00000000273342
Oryza sativa ssp. japonica	8	3	CH_osa_385	4	19	0.000191834
Populus trichocarpa	Chr06	3	CH_ptr_396	4	10	0.0000794043
Populus trichocarpa	Chr09	3	CH_ptr_176	5	6	0.00000000386827
Populus trichocarpa	Chr18	3	CH_ptr_39	9	10	4.5622e-20
Populus trichocarpa	Chr18	6	CH_ptr_32	10	16	5.69169e-20
Prunus persica	scaffold_1	3	CH_ppe_298	4	9	0.0000157602
Solanum lycopersicum	ch01	1	CH_sly_45	7	7	4.33164e-16
Solanum lycopersicum	ch01	3	CH_sly_462	3	3	0.000160523
Solanum tuberosum	chr08	1	CH_stu_86	6	6	0.000000000000126083
Solanum tuberosum	chr05	2	CH_stu_564	3	4	0.000699035
Solanum tuberosum	chr08	2	CH_stu_112	6	6	0.000000000000747406
Solanum tuberosum	chr01	3	CH_stu_249	5	5	0.00000000177602
Solanum tuberosum	chr08	3	CH_stu_386	4	4	0.000000831819
Solanum tuberosum	chr08	3	CH_stu_705	3	3	0.000384475
Solanum tuberosum	chr08	3	CH_stu_385	4	4	0.000000831819
Solanum tuberosum	chr08	6	CH_stu_133	12	291	0.0000000905643
Theobroma cacao	scaffold_5	1	CH_tca_20	7	7	3.37836e-17
Theobroma cacao	scaffold_6	1	CH_tca_112	4	5	0.000000194317
Theobroma cacao	scaffold_5	2	CH_tca_23	7	7	3.03041e-16
Theobroma cacao	scaffold_9	3	CH_tca_243	4	6	0.00000646925
Theobroma cacao	scaffold_9	3	CH_tca_179	5	11	0.000000371215
Vitis vinifera	chr4	3	CH_vvi_306	4	9	0.0000284967

Available child term results

GO term	Description	Number of clusters
GO:0003868	4-hydroxyphenylpyruvate dioxygenase activity	15
GO:0004411	homogentisate 1,2-dioxygenase activity	6
GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	38
GO:0016165	linoleate 13S-lipoxygenase activity	77
GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	4
GO:0050313	sulfur dioxygenase activity	2
GO:1990136	linoleate 9S-lipoxygenase activity	18

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V