Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0016567
- Description
- protein ubiquitination
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_231 | 3 | 3 | 0.000827675 |
Arabidopsis lyrata | scaffold_6 | 1 | CH_aly_117 | 4 | 4 | 0.00000240398 |
Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_61 | 7 | 11 | 0.000000000659744 |
Capsella rubella | scaffold_2 | 2 | CH_cru_2 | 17 | 21 | 1.82016e-30 |
Capsella rubella | scaffold_7 | 2 | CH_cru_104 | 6 | 8 | 0.0000000369337 |
Capsella rubella | scaffold_2 | 5 | CH_cru_2 | 17 | 21 | 1.82016e-30 |
Citrus sinensis | scaffold00042 | 2 | CH_csi_22 | 7 | 7 | 0.00000000000153946 |
Citrus sinensis | scaffold00042 | 3 | CH_csi_31 | 7 | 7 | 0.00000000000404043 |
Eucalyptus grandis | scaffold_1 | 1 | CH_egr_141 | 7 | 8 | 0.000000000000172387 |
Eucalyptus grandis | scaffold_11 | 1 | CH_egr_374 | 4 | 4 | 0.00000146107 |
Eucalyptus grandis | scaffold_4 | 1 | CH_egr_373 | 4 | 4 | 0.00000146107 |
Eucalyptus grandis | scaffold_4 | 2 | CH_egr_522 | 4 | 4 | 0.00000791851 |
Eucalyptus grandis | scaffold_4 | 3 | CH_egr_603 | 4 | 4 | 0.0000121237 |
Fragaria vesca | LG1 | 1 | CH_fve_226 | 3 | 3 | 0.000294408 |
Glycine max | Gm11 | 2 | CH_gma_474 | 6 | 36 | 0.000993902 |
Glycine max | Gm11 | 8 | CH_gma_4 | 6 | 36 | 0.000318907 |
Medicago truncatula | chr1 | 1 | CH_mtr_328 | 4 | 6 | 0.00000449177 |
Medicago truncatula | chr5 | 2 | CH_mtr_219 | 9 | 61 | 0.0000000164578 |
Medicago truncatula | chr5 | 4 | CH_mtr_73 | 10 | 102 | 0.0000000000408752 |
Medicago truncatula | chr5 | 5 | CH_mtr_107 | 10 | 102 | 0.0000000522069 |
Solanum lycopersicum | ch11 | 2 | CH_sly_386 | 5 | 16 | 0.000230697 |
Solanum lycopersicum | ch11 | 3 | CH_sly_589 | 5 | 16 | 0.000563343 |
Solanum tuberosum | chr01 | 1 | CH_stu_76 | 8 | 11 | 0.00000000000000932326 |
Solanum tuberosum | chr04 | 1 | CH_stu_488 | 3 | 3 | 0.000610559 |
Solanum tuberosum | chr01 | 2 | CH_stu_111 | 8 | 11 | 0.000000000000650168 |
Solanum tuberosum | chr11 | 2 | CH_stu_424 | 5 | 14 | 0.000103276 |
Solanum tuberosum | chr01 | 3 | CH_stu_58 | 11 | 11 | 1.86517e-21 |
Solanum tuberosum | chr11 | 3 | CH_stu_660 | 5 | 14 | 0.000239094 |
Solanum tuberosum | chr01 | 4 | CH_stu_91 | 10 | 111 | 0.0000000133272 |
Solanum tuberosum | chr01 | 6 | CH_stu_58 | 11 | 11 | 1.86517e-21 |
Thellungiella parvula | ch6-6 | 1 | CH_tpa_127 | 3 | 3 | 0.000474769 |
Theobroma cacao | scaffold_1 | 1 | CH_tca_262 | 3 | 3 | 0.000319 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0051444 | negative regulation of ubiquitin-protein ligase activity | 4 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |