PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016298
Description: lipase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	1	CH_aly_106	4	4	0.0000010219
Arabidopsis lyrata	scaffold_2	2	CH_aly_157	4	4	0.00000320897
Arabidopsis lyrata	scaffold_2	3	CH_aly_182	4	4	0.00000347217
Arabidopsis thaliana	1	1	CH_ath_185	4	4	0.00000888467
Arabidopsis thaliana	1	2	CH_ath_222	4	4	0.00000914989
Arabidopsis thaliana	1	3	CH_ath_236	4	4	0.00000969808
Brassica rapa	A03	1	CH_bra_178	3	3	0.000733115
Capsella rubella	scaffold_1	1	CH_cru_242	3	3	0.000926228
Capsella rubella	scaffold_2	1	CH_cru_65	5	5	0.00000000940639
Capsella rubella	scaffold_2	2	CH_cru_105	5	5	0.0000000390707
Capsella rubella	scaffold_2	3	CH_cru_123	5	5	0.0000000445408
Carica papaya	supercontig_26	1	CH_cpa_152	3	3	0.000294429
Carica papaya	supercontig_26	2	CH_cpa_215	3	3	0.000589056
Carica papaya	supercontig_26	3	CH_cpa_334	3	3	0.00074076
Chlamydomonas reinhardtii	chromosome_2	1	CH_cre_17	5	9	0.0000000307565
Chlamydomonas reinhardtii	chromosome_2	2	CH_cre_17	5	9	0.0000000765759
Chlamydomonas reinhardtii	chromosome_2	3	CH_cre_13	7	9	0.0000000000005024
Citrus sinensis	scaffold00002	1	CH_csi_121	3	3	0.000266478
Citrus sinensis	scaffold00002	2	CH_csi_184	3	3	0.000620843
Citrus sinensis	scaffold00002	3	CH_csi_258	3	3	0.000799011
Eucalyptus grandis	scaffold_9	4	CH_egr_128	15	293	0.000000000303387
Glycine max	Gm17	1	CH_gma_191	4	5	0.00000916341
Glycine max	Gm17	2	CH_gma_272	4	5	0.000029278
Glycine max	Gm17	3	CH_gma_341	4	5	0.0000373825
Gossypium raimondii	Chr07	2	CH_gra_58	7	9	0.00000000000655625
Gossypium raimondii	Chr07	3	CH_gra_85	7	9	0.0000000000130307
Malus domestica	12	1	CH_mdo_72	4	5	0.000000670742
Malus domestica	12	2	CH_mdo_94	4	5	0.00000221349
Malus domestica	12	3	CH_mdo_139	4	5	0.00000359635
Medicago truncatula	chr1	1	CH_mtr_287	5	21	0.00000149935
Medicago truncatula	chr1	2	CH_mtr_401	5	21	0.0000121813
Medicago truncatula	chr1	3	CH_mtr_517	5	21	0.0000211929
Solanum lycopersicum	ch06	1	CH_sly_317	4	6	0.000162026
Thellungiella parvula	ch1-1	1	CH_tpa_125	3	3	0.000453823
Thellungiella parvula	ch5-7	1	CH_tpa_48	4	4	0.00000115417
Thellungiella parvula	ch5-7	2	CH_tpa_87	4	4	0.00000439655
Thellungiella parvula	ch5-7	3	CH_tpa_105	4	4	0.00000521737
Vitis vinifera	chr5	2	CH_vvi_118	6	12	0.0000000160057
Vitis vinifera	chr7	2	CH_vvi_201	6	27	0.00000494193
Vitis vinifera	chr5	3	CH_vvi_161	6	12	0.0000000400545
Vitis vinifera	chr7	3	CH_vvi_277	6	27	0.0000122896

Available child term results

GO term	Description	Number of clusters
GO:0004435	phosphatidylinositol phospholipase C activity	93
GO:0004620	phospholipase activity	3
GO:0004623	phospholipase A2 activity	11
GO:0004629	phospholipase C activity	3
GO:0004630	phospholipase D activity	1
GO:0004767	sphingomyelin phosphodiesterase activity	3
GO:0004806	triglyceride lipase activity	133
GO:0047714	galactolipase activity	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V