Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0016192
- Description
- vesicle-mediated transport
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Eucalyptus grandis | scaffold_7 | 1 | CH_egr_427 | 5 | 10 | 0.0000128016 |
Eucalyptus grandis | scaffold_7 | 2 | CH_egr_611 | 5 | 10 | 0.000068034 |
Eucalyptus grandis | scaffold_7 | 3 | CH_egr_736 | 5 | 10 | 0.000154125 |
Glycine max | Gm14 | 5 | CH_gma_46 | 10 | 43 | 0.0000000802441 |
Glycine max | Gm14 | 6 | CH_gma_37 | 10 | 16 | 0.00000000000227774 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0000301 | retrograde transport, vesicle recycling within Golgi | 1 |
GO:0006887 | exocytosis | 34 |
GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | 9 |
GO:0006891 | intra-Golgi vesicle-mediated transport | 2 |
GO:0006897 | endocytosis | 3 |
GO:0006904 | vesicle docking involved in exocytosis | 1 |
GO:0042147 | retrograde transport, endosome to Golgi | 12 |
GO:0048193 | Golgi vesicle transport | 1 |
GO:0048208 | COPII vesicle coating | 18 |
GO:0048268 | clathrin coat assembly | 2 |
GO:0048278 | vesicle docking | 3 |
GO:0048280 | vesicle fusion with Golgi apparatus | 5 |
GO:0090114 | COPII-coated vesicle budding | 13 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |