PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016053
Description: organic acid biosynthetic process

Cluster overview

No results found

Available child term results

GO term	Description	Number of clusters
GO:0000162	tryptophan biosynthetic process	1
GO:0006065	UDP-glucuronate biosynthetic process	5
GO:0006529	asparagine biosynthetic process	4
GO:0006535	cysteine biosynthetic process from serine	12
GO:0006542	glutamine biosynthetic process	8
GO:0006556	S-adenosylmethionine biosynthetic process	3
GO:0006571	tyrosine biosynthetic process	9
GO:0006633	fatty acid biosynthetic process	40
GO:0006636	unsaturated fatty acid biosynthetic process	3
GO:0008612	peptidyl-lysine modification to hypusine	3
GO:0008652	cellular amino acid biosynthetic process	5
GO:0009067	aspartate family amino acid biosynthetic process	1
GO:0009098	leucine biosynthetic process	1
GO:0009423	chorismate biosynthetic process	1
GO:0009697	salicylic acid biosynthetic process	42
GO:0010371	regulation of gibberellin biosynthetic process	2
GO:0010373	negative regulation of gibberellin biosynthetic process	2
GO:0019281	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine	1
GO:0019370	leukotriene biosynthetic process	7
GO:0019509	L-methionine salvage from methylthioadenosine	14
GO:0030418	nicotianamine biosynthetic process	11
GO:0030497	fatty acid elongation	4
GO:0031408	oxylipin biosynthetic process	12
GO:0033587	shikimate biosynthetic process	4
GO:0042318	penicillin biosynthetic process	2
GO:0042450	arginine biosynthetic process via ornithine	1
GO:0046394	carboxylic acid biosynthetic process	2
GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	4
GO:0071266	'de novo' L-methionine biosynthetic process	9
GO:0080142	regulation of salicylic acid biosynthetic process	7
GO:0090359	negative regulation of abscisic acid biosynthetic process	6
GO:1901607	alpha-amino acid biosynthetic process	11
GO:2000082	regulation of L-ascorbic acid biosynthetic process	2
GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	40

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V