PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	1	CH_ath_46	9	12	0.0000000000274039
Arabidopsis thaliana	1	1	CH_ath_138	7	12	0.000000730918
Arabidopsis thaliana	1	2	CH_ath_66	9	12	0.000000000044827
Arabidopsis thaliana	1	2	CH_ath_171	7	12	0.00000106913
Arabidopsis thaliana	1	3	CH_ath_72	9	12	0.000000000044827
Arabidopsis thaliana	1	3	CH_ath_181	7	12	0.00000106913
Eucalyptus grandis	scaffold_6	1	CH_egr_229	4	4	0.00000000108909

GO term	Description	Number of clusters
GO:0001561	fatty acid alpha-oxidation	13
GO:0006635	fatty acid beta-oxidation	3
GO:0016103	diterpenoid catabolic process	4
GO:0016121	carotene catabolic process	1
GO:0016124	xanthophyll catabolic process	16
GO:0016127	sterol catabolic process	51
GO:0044242	cellular lipid catabolic process	1
GO:0046340	diacylglycerol catabolic process	6
GO:0046345	abscisic acid catabolic process	28
GO:0046466	membrane lipid catabolic process	8
GO:0046477	glycosylceramide catabolic process	3
GO:0050994	regulation of lipid catabolic process	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V