PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016021
Description: integral to membrane

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00109	1	CH_atr_230	5	6	0.000834368
Amborella trichopoda	scaffold00044	2	CH_atr_201	9	28	0.000322537
Amborella trichopoda	scaffold00016	3	CH_atr_332	5	5	0.000578869
Amborella trichopoda	scaffold00077	3	CH_atr_331	5	5	0.000578869
Amborella trichopoda	scaffold00044	6	CH_atr_72	10	28	0.000103427
Arabidopsis lyrata	scaffold_1	4	CH_aly_27	11	32	0.0000240747
Arabidopsis lyrata	scaffold_1	5	CH_aly_52	11	32	0.0000523527
Arabidopsis lyrata	scaffold_1	6	CH_aly_84	11	32	0.000259404
Arabidopsis thaliana	1	1	CH_ath_260	19	47	0.000155183
Arabidopsis thaliana	1	2	CH_ath_307	19	47	0.000162323
Arabidopsis thaliana	1	3	CH_ath_354	19	47	0.000221521
Arabidopsis thaliana	3	3	CH_ath_441	20	55	0.000765721
Arabidopsis thaliana	1	4	CH_ath_96	19	47	0.000155183
Arabidopsis thaliana	1	5	CH_ath_116	19	47	0.000162323
Arabidopsis thaliana	1	6	CH_ath_123	19	47	0.000221521
Arabidopsis thaliana	3	6	CH_ath_159	20	55	0.000765721
Capsella rubella	scaffold_5	6	CH_cru_36	11	14	0.00000000361572
Citrullus lanatus	Chr3	3	CH_cla_88	11	17	0.000000029473
Citrullus lanatus	Chr2	6	CH_cla_34	10	17	0.00000126104
Citrullus lanatus	Chr3	6	CH_cla_24	11	17	0.000000029473
Eucalyptus grandis	scaffold_11	1	CH_egr_200	12	17	0.0000000000975616
Eucalyptus grandis	scaffold_5	1	CH_egr_507	7	10	0.0000841653
Eucalyptus grandis	scaffold_6	1	CH_egr_454	6	6	0.0000253386
Eucalyptus grandis	scaffold_7	1	CH_egr_592	11	39	0.000468985
Eucalyptus grandis	scaffold_9	1	CH_egr_526	9	21	0.000144241
Eucalyptus grandis	scaffold_11	2	CH_egr_273	12	17	0.00000000023492
Eucalyptus grandis	scaffold_6	2	CH_egr_568	6	6	0.0000394857
Eucalyptus grandis	scaffold_9	2	CH_egr_713	9	21	0.000273765
Eucalyptus grandis	scaffold_11	3	CH_egr_356	12	17	0.00000000140024
Eucalyptus grandis	scaffold_6	3	CH_egr_707	6	6	0.0000973942
Eucalyptus grandis	scaffold_11	4	CH_egr_123	12	17	0.0000000000975616
Eucalyptus grandis	scaffold_7	4	CH_egr_243	11	39	0.000468985
Eucalyptus grandis	scaffold_11	5	CH_egr_139	12	17	0.00000000023492
Eucalyptus grandis	scaffold_11	6	CH_egr_177	12	17	0.00000000140024
Malus domestica	15	3	CH_mdo_230	11	36	0.00013387
Malus domestica	15	6	CH_mdo_48	11	36	0.00013387
Manihot esculenta	scaffold01701	1	CH_mes_172	5	5	0.000816758
Manihot esculenta	scaffold08799	1	CH_mes_171	5	5	0.000816758
Manihot esculenta	scaffold10173	1	CH_mes_170	5	5	0.000816758
Manihot esculenta	scaffold03614	4	CH_mes_16	11	31	0.0000460208
Manihot esculenta	scaffold03614	5	CH_mes_17	11	31	0.000107511
Medicago truncatula	chr5	1	CH_mtr_306	11	43	0.00000261806
Medicago truncatula	chr5	2	CH_mtr_375	11	43	0.00000528938
Medicago truncatula	chr5	3	CH_mtr_443	13	51	0.00000335883
Medicago truncatula	chr5	4	CH_mtr_128	11	43	0.00000261806
Medicago truncatula	chr5	5	CH_mtr_139	11	43	0.00000528938
Medicago truncatula	chr5	6	CH_mtr_159	13	51	0.00000335883
Oryza sativa ssp. japonica	3	3	CH_osa_242	10	24	0.00000773144
Solanum lycopersicum	ch03	1	CH_sly_195	7	7	0.000000980612
Solanum lycopersicum	ch03	2	CH_sly_214	7	7	0.00000146516
Solanum lycopersicum	ch03	3	CH_sly_307	7	7	0.00000494822
Solanum lycopersicum	ch03	6	CH_sly_112	11	23	0.0000100436
Solanum tuberosum	chr03	1	CH_stu_242	7	7	0.000000465365
Solanum tuberosum	chr03	1	CH_stu_381	6	7	0.0001142
Solanum tuberosum	chr03	2	CH_stu_443	6	7	0.000170404
Solanum tuberosum	chr03	3	CH_stu_436	7	7	0.00000367723
Theobroma cacao	scaffold_5	3	CH_tca_454	7	12	0.000977087

Available child term results

GO term	Description	Number of clusters
GO:0005643	nuclear pore	21
GO:0005779	integral to peroxisomal membrane	5
GO:0008076	voltage-gated potassium channel complex	3
GO:0030173	integral to Golgi membrane	12
GO:0031305	integral to mitochondrial inner membrane	1
GO:0031307	integral to mitochondrial outer membrane	1
GO:0031357	integral to chloroplast inner membrane	4
GO:0034707	chloride channel complex	1
GO:0042765	GPI-anchor transamidase complex	2
GO:0071458	integral to cytosolic side of endoplasmic reticulum membrane	2
GO:0072546	ER membrane protein complex	17

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V