Functional clusters   top

Information

Type
GO term
Identifier
GO:0016020
Description
membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodascaffold000551CH_atr_10411230.00000253624
Amborella trichopodascaffold001313CH_atr_17611110.0000033524
Amborella trichopodascaffold000554CH_atr_3611230.00000253624
Amborella trichopodascaffold000686CH_atr_90371140.000765416
Amborella trichopodascaffold001316CH_atr_5611110.0000033524
Beta vulgarisBvchr9.sca02610CH_bvu_1472820.000380473
Capsella rubellascaffold_53CH_cru_31429530.000235475
Capsella rubellascaffold_56CH_cru_9529530.000235475
Citrullus lanatusChr75CH_cla_46712670.0005461
Citrullus lanatusChr76CH_cla_69762670.00092031
Cucumis meloCM3.5_scaffold000374CH_cme_3610260.000281459
Cucumis meloCM3.5_scaffold000065CH_cme_28682550.0000139812
Eucalyptus grandisscaffold_111CH_egr_62212390.000933258
Eucalyptus grandisscaffold_81CH_egr_41715470.00000952606
Eucalyptus grandisscaffold_42CH_egr_57325530.0000447382
Eucalyptus grandisscaffold_82CH_egr_29729490.00000000107907
Eucalyptus grandisscaffold_103CH_egr_62311110.0000251817
Eucalyptus grandisscaffold_43CH_egr_22830410.00000000000234634
Eucalyptus grandisscaffold_83CH_egr_37530490.00000000410636
Eucalyptus grandisscaffold_114CH_egr_25312390.000933258
Eucalyptus grandisscaffold_115CH_egr_287491680.000721276
Eucalyptus grandisscaffold_45CH_egr_24025530.0000447382
Eucalyptus grandisscaffold_85CH_egr_14629490.00000000107907
Eucalyptus grandisscaffold_95CH_egr_25515220.000109288
Eucalyptus grandisscaffold_106CH_egr_26411110.0000251817
Eucalyptus grandisscaffold_116CH_egr_288551680.000131417
Eucalyptus grandisscaffold_46CH_egr_77851862.28602e-19
Eucalyptus grandisscaffold_86CH_egr_18430490.00000000410636
Eucalyptus grandisscaffold_911CH_egr_11482440.000594211
Fragaria vescaLG23CH_fve_29013180.0000932049
Fragaria vescaLG26CH_fve_8613180.0000932049
Fragaria vescaLG36CH_fve_5411110.00000146028
Glycine maxGm041CH_gma_237770.0000424936
Glycine maxGm061CH_gma_238770.0000424936
Glycine maxGm054CH_gma_7610200.000615552
Gossypium raimondiiChr042CH_gra_34328620.0005485
Gossypium raimondiiChr045CH_gra_8228620.0005485
Gossypium raimondiiChr046CH_gra_10010100.000565935
Malus domestica103CH_mdo_16126690.0000115183
Malus domestica15CH_mdo_44351530.000364148
Malus domestica106CH_mdo_26361150.00000240124
Medicago truncatulachr31CH_mtr_46513690.000202763
Medicago truncatulachr41CH_mtr_20412300.0000000452839
Medicago truncatulachr61CH_mtr_397670.0000487492
Medicago truncatulachr42CH_mtr_46118460.0000429073
Medicago truncatulachr43CH_mtr_82215320.00062189
Medicago truncatulachr43CH_mtr_39026680.000000776288
Medicago truncatulachr34CH_mtr_154171120.0000273832
Medicago truncatulachr44CH_mtr_10012300.0000000452839
Medicago truncatulachr74CH_mtr_7620850.000000000132748
Medicago truncatulachr35CH_mtr_184432260.000124855
Medicago truncatulachr45CH_mtr_16518460.0000429073
Medicago truncatulachr36CH_mtr_268562990.000645407
Medicago truncatulachr76CH_mtr_190421770.0000323048
Oryza sativa ssp. japonica11CH_osa_14514240.000000164373
Oryza sativa ssp. japonica61CH_osa_21018520.00000912321
Oryza sativa ssp. japonica61CH_osa_38410190.000885513
Oryza sativa ssp. japonica81CH_osa_3068100.000202551
Oryza sativa ssp. japonica91CH_osa_25518560.0000366648
Oryza sativa ssp. japonica12CH_osa_28814240.000102023
Oryza sativa ssp. japonica13CH_osa_25719380.0000138685
Oryza sativa ssp. japonica43CH_osa_48025750.000783481
Oryza sativa ssp. japonica14CH_osa_7314240.000000164373
Oryza sativa ssp. japonica14CH_osa_66482700.0000000491952
Oryza sativa ssp. japonica34CH_osa_139412680.000233121
Oryza sativa ssp. japonica44CH_osa_153321840.000501247
Oryza sativa ssp. japonica44CH_osa_78432420.000000750674
Oryza sativa ssp. japonica64CH_osa_114462990.000022681
Oryza sativa ssp. japonica64CH_osa_10218520.00000912321
Oryza sativa ssp. japonica94CH_osa_12318560.0000366648
Oryza sativa ssp. japonica15CH_osa_14214240.000102023
Oryza sativa ssp. japonica15CH_osa_80642760.0000000757052
Oryza sativa ssp. japonica35CH_osa_104602770.0000071701
Oryza sativa ssp. japonica45CH_osa_84612650.000000348518
Oryza sativa ssp. japonica16CH_osa_12619380.0000138685
Oryza sativa ssp. japonica36CH_osa_102672950.00000104449
Oryza sativa ssp. japonica46CH_osa_97632650.000000521568
Oryza sativa ssp. japonica48CH_osa_4718510.000563418
Oryza sativa ssp. japonica49CH_osa_3919510.000218217
Oryza sativa ssp. japonica410CH_osa_61352920.000631934
Oryza sativa ssp. japonica410CH_osa_63312420.000826364
Oryza sativa ssp. japonica410CH_osa_31403130.00000975545
Oryza sativa ssp. japonica411CH_osa_51553160.0000439686
Oryza sativa ssp. japonica412CH_osa_67563160.000153462
Prunus persicascaffold_11CH_ppe_2208100.0000150612
Prunus persicascaffold_12CH_ppe_39722470.000492348
Prunus persicascaffold_13CH_ppe_37210100.000104188
Prunus persicascaffold_13CH_ppe_48723470.000531176
Prunus persicascaffold_14CH_ppe_9510200.000084398
Prunus persicascaffold_15CH_ppe_12322470.000492348
Prunus persicascaffold_16CH_ppe_13610100.000104188
Prunus persicascaffold_16CH_ppe_15123470.000531176
Prunus persicascaffold_26CH_ppe_124632020.0000228231
Ricinus communis298224CH_rco_3111270.00025092
Ricinus communis298225CH_rco_3212150.00021365
Ricinus communis298226CH_rco_5213160.00013473
Solanum lycopersicumch121CH_sly_1829100.000000491099
Solanum lycopersicumch026CH_sly_71471060.00000000134417
Solanum tuberosumchr011CH_stu_389660.000139864
Solanum tuberosumchr051CH_stu_4877100.000599491
Solanum tuberosumchr051CH_stu_6318242.20443e-16
Solanum tuberosumchr023CH_stu_51312130.0000246989
Solanum tuberosumchr033CH_stu_36730580.000000500319
Solanum tuberosumchr054CH_stu_5218242.20443e-16
Solanum tuberosumchr026CH_stu_182642110.0000366628
Solanum tuberosumchr036CH_stu_12835700.000000037178
Theobroma cacaoscaffold_23CH_tca_40326590.000437218
Theobroma cacaoscaffold_54CH_tca_5610190.0000205833
Vitis viniferachr111CH_vvi_2158110.0000583314
Vitis viniferachr41CH_vvi_7512130.0000000000188818
Vitis viniferachr91CH_vvi_5516210.0000000000000934954
Vitis viniferachr42CH_vvi_19015190.00000251074
Vitis viniferachr43CH_vvi_29015190.0000183717
Vitis viniferachr44CH_vvi_4512130.0000000000188818
Vitis viniferachr45CH_vvi_6715190.00000251074
Vitis viniferachr26CH_vvi_104521490.0000173497
Vitis viniferachr46CH_vvi_10515190.0000183717

Available child term results

GO term Description Number of clusters
GO:0000139Golgi membrane3
GO:0000221vacuolar proton-transporting V-type ATPase, V1 domain3
GO:0000275mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)8
GO:0000276mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)11
GO:0000813ESCRT I complex2
GO:0005643nuclear pore21
GO:0005741mitochondrial outer membrane2
GO:0005743mitochondrial inner membrane4
GO:0005744mitochondrial inner membrane presequence translocase complex12
GO:0005746mitochondrial respiratory chain9
GO:0005774vacuolar membrane13
GO:0005778peroxisomal membrane6
GO:0005779integral to peroxisomal membrane5
GO:0005787signal peptidase complex3
GO:0005886plasma membrane35
GO:0005901caveola4
GO:0008076voltage-gated potassium channel complex3
GO:0008250oligosaccharyltransferase complex2
GO:0009279cell outer membrane6
GO:0009521photosystem12
GO:0009522photosystem I16
GO:0009523photosystem II9
GO:0009535chloroplast thylakoid membrane54
GO:0009538photosystem I reaction center3
GO:0009654photosystem II oxygen evolving complex10
GO:0009705plant-type vacuole membrane7
GO:0009706chloroplast inner membrane2
GO:0009707chloroplast outer membrane1
GO:0009783photosystem II antenna complex2
GO:0009897external side of plasma membrane1
GO:0009925basal plasma membrane4
GO:0012507ER to Golgi transport vesicle membrane1
GO:0016021integral to membrane57
GO:0016471vacuolar proton-transporting V-type ATPase complex6
GO:0019898extrinsic to membrane9
GO:0030095chloroplast photosystem II1
GO:0030117membrane coat10
GO:0030123AP-3 adaptor complex2
GO:0030126COPI vesicle coat11
GO:0030127COPII vesicle coat2
GO:0030130clathrin coat of trans-Golgi network vesicle1
GO:0030131clathrin adaptor complex4
GO:0030173integral to Golgi membrane12
GO:0030659cytoplasmic vesicle membrane2
GO:0030665clathrin-coated vesicle membrane2
GO:0030904retromer complex2
GO:0031090organelle membrane5
GO:0031224intrinsic to membrane14
GO:0031225anchored to membrane36
GO:0031227intrinsic to endoplasmic reticulum membrane5
GO:0031305integral to mitochondrial inner membrane1
GO:0031307integral to mitochondrial outer membrane1
GO:0031314extrinsic to mitochondrial inner membrane20
GO:0031357integral to chloroplast inner membrane4
GO:0031897Tic complex2
GO:0031965nuclear membrane1
GO:0031966mitochondrial membrane3
GO:0031968organelle outer membrane1
GO:0031969chloroplast membrane4
GO:0033176proton-transporting V-type ATPase complex3
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain1
GO:0033179proton-transporting V-type ATPase, V0 domain8
GO:0033180proton-transporting V-type ATPase, V1 domain3
GO:0034707chloride channel complex1
GO:0042175nuclear outer membrane-endoplasmic reticulum membrane network4
GO:0042406extrinsic to endoplasmic reticulum membrane1
GO:0042651thylakoid membrane2
GO:0042765GPI-anchor transamidase complex2
GO:0044425membrane part20
GO:0044599AP-5 adaptor complex15
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)6
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)7
GO:0048475coated membrane1
GO:0071458integral to cytosolic side of endoplasmic reticulum membrane2
GO:0072546ER membrane protein complex17

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V