Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0015979
- Description
- photosynthesis
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Amborella trichopoda | chloroplast | 2 | CH_atr_3 | 25 | 66 | 2.62258e-41 |
Arabidopsis lyrata | scaffold_2 | 2 | CH_aly_4 | 22 | 80 | 2.1967e-31 |
Arabidopsis lyrata | scaffold_2 | 3 | CH_aly_5 | 22 | 80 | 2.70962e-29 |
Arabidopsis lyrata | scaffold_2 | 8 | CH_aly_2 | 13 | 91 | 0.0000000000000253374 |
Arabidopsis lyrata | scaffold_2 | 9 | CH_aly_2 | 13 | 91 | 0.000000000000240705 |
Citrus sinensis | chloroplast | 2 | CH_csi_2 | 26 | 69 | 4.74221e-39 |
Citrus sinensis | chloroplast | 3 | CH_csi_2 | 26 | 69 | 5.61152e-37 |
Glycine max | chloroplast | 2 | CH_gma_3 | 25 | 62 | 2.76852e-38 |
Glycine max | Gm12 | 2 | CH_gma_258 | 4 | 4 | 0.0000188221 |
Glycine max | Gm12 | 3 | CH_gma_342 | 4 | 4 | 0.0000397595 |
Glycine max | Gm12 | 8 | CH_gma_2 | 4 | 4 | 0.0000165802 |
Glycine max | Gm12 | 9 | CH_gma_4 | 4 | 4 | 0.0000334778 |
Lotus japonicus | chloroplast | 2 | CH_lja_1 | 25 | 63 | 2.7294e-44 |
Lotus japonicus | chloroplast | 3 | CH_lja_1 | 25 | 63 | 5.98669e-42 |
Medicago truncatula | chr4 | 2 | CH_mtr_274 | 8 | 74 | 0.000000157753 |
Medicago truncatula | chr4 | 8 | CH_mtr_6 | 8 | 83 | 0.000000233418 |
Oryza sativa ssp. japonica | 2 | 2 | CH_osa_91 | 7 | 15 | 0.000000000570326 |
Oryza sativa ssp. japonica | 2 | 3 | CH_osa_108 | 7 | 15 | 0.00000000119503 |
Oryza sativa ssp. japonica | 6 | 7 | CH_osa_15 | 5 | 8 | 0.00000012441 |
Oryza sativa ssp. japonica | 2 | 8 | CH_osa_20 | 5 | 15 | 0.0000103643 |
Ostreococcus lucimarinus | Chr_2 | 1 | CH_olu_4 | 5 | 6 | 0.000000236181 |
Ostreococcus lucimarinus | Chr_2 | 2 | CH_olu_6 | 5 | 6 | 0.000000808376 |
Ostreococcus lucimarinus | Chr_2 | 3 | CH_olu_7 | 5 | 6 | 0.00000355953 |
Physcomitrella patens | chloroplast | 2 | CH_ppa_1 | 24 | 70 | 3.26832e-33 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0009765 | photosynthesis, light harvesting | 37 |
GO:0009769 | photosynthesis, light harvesting in photosystem II | 20 |
GO:0009772 | photosynthetic electron transport in photosystem II | 1 |
GO:0010205 | photoinhibition | 2 |
GO:0010270 | photosystem II oxygen evolving complex assembly | 2 |
GO:0019684 | photosynthesis, light reaction | 1 |
GO:0080005 | photosystem stoichiometry adjustment | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |