PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	2	CH_aly_320	2	2	0.000631373
Arabidopsis lyrata	scaffold_1	3	CH_aly_373	2	2	0.000631373
Beta vulgaris	Bvchr4.sca001	2	CH_bvu_284	2	2	0.000579374
Beta vulgaris	Bvchr4.sca001	3	CH_bvu_339	2	2	0.000579374
Capsella rubella	scaffold_1	2	CH_cru_342	2	2	0.000763242
Capsella rubella	scaffold_1	3	CH_cru_386	2	2	0.000763242
Carica papaya	supercontig_119	2	CH_cpa_211	2	2	0.000582496
Carica papaya	supercontig_119	3	CH_cpa_321	2	2	0.000582496
Citrus sinensis	scaffold00043	2	CH_csi_194	2	2	0.000694887
Citrus sinensis	scaffold00043	3	CH_csi_248	2	2	0.000694887
Fragaria vesca	LG3	2	CH_fve_147	3	6	0.00000602113
Fragaria vesca	LG3	3	CH_fve_203	3	6	0.00000602113
Lotus japonicus	chr4	2	CH_lja_151	2	2	0.000403361
Lotus japonicus	chr4	3	CH_lja_189	2	2	0.000403361
Malus domestica	11	2	CH_mdo_55	3	3	0.000000111859
Malus domestica	11	3	CH_mdo_77	3	3	0.000000111859
Populus trichocarpa	Chr01	2	CH_ptr_441	2	2	0.000747031
Populus trichocarpa	Chr01	3	CH_ptr_546	2	2	0.000747031
Prunus persica	scaffold_6	3	CH_ppe_194	3	3	0.000000155893
Ricinus communis	29835	2	CH_rco_110	3	5	0.00000144614
Ricinus communis	29835	3	CH_rco_141	3	5	0.00000144614
Vitis vinifera	chr2	2	CH_vvi_146	3	3	0.000000169705
Vitis vinifera	chr2	3	CH_vvi_182	3	3	0.000000169705

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V