PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Beta vulgaris	Bvchr2.sca001	2	CH_bvu_177	2	2	0.0000965624
Beta vulgaris	Bvchr2.sca001	3	CH_bvu_223	2	2	0.0000965624
Brassica rapa	A05	2	CH_bra_283	2	2	0.000744325
Brassica rapa	A05	3	CH_bra_339	2	2	0.000744325
Solanum lycopersicum	ch03	1	CH_sly_366	2	2	0.000344244
Solanum lycopersicum	ch05	1	CH_sly_367	2	2	0.000344244
Solanum lycopersicum	ch03	2	CH_sly_404	2	2	0.000344244
Solanum lycopersicum	ch05	2	CH_sly_405	2	2	0.000344244
Solanum lycopersicum	ch03	3	CH_sly_526	2	2	0.000344244
Solanum lycopersicum	ch05	3	CH_sly_527	2	2	0.000344244
Solanum tuberosum	chr03	2	CH_stu_511	2	2	0.000341588
Solanum tuberosum	chr05	2	CH_stu_510	2	2	0.000341588
Solanum tuberosum	chr03	3	CH_stu_683	2	2	0.000341588
Thellungiella parvula	ch4-6	2	CH_tpa_151	2	2	0.000238407
Thellungiella parvula	ch4-6	3	CH_tpa_183	2	2	0.000238407

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V