PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_2	3	CH_cpa_173	5	9	0.0000610538
Eucalyptus grandis	scaffold_7	4	CH_egr_183	11	117	0.00000193069
Solanum tuberosum	chr12	1	CH_stu_494	4	6	0.000672867

GO term	Description	Number of clusters
GO:0004129	cytochrome-c oxidase activity	13
GO:0005249	voltage-gated potassium channel activity	5
GO:0005267	potassium channel activity	3
GO:0005272	sodium channel activity	18
GO:0005432	calcium:sodium antiporter activity	5
GO:0005451	monovalent cation:hydrogen antiporter activity	3
GO:0008121	ubiquinol-cytochrome-c reductase activity	4
GO:0008508	bile acid:sodium symporter activity	9
GO:0008519	ammonium transmembrane transporter activity	6
GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	10
GO:0009671	nitrate:hydrogen symporter activity	2
GO:0009674	potassium:sodium symporter activity	18
GO:0015078	hydrogen ion transmembrane transporter activity	19
GO:0015079	potassium ion transmembrane transporter activity	8
GO:0015271	outward rectifier potassium channel activity	2
GO:0015299	solute:hydrogen antiporter activity	72
GO:0015369	calcium:hydrogen antiporter activity	26
GO:0015370	solute:sodium symporter activity	6
GO:0015385	sodium:hydrogen antiporter activity	8
GO:0015398	high affinity secondary active ammonium transmembrane transporter activity	2
GO:0022821	potassium ion antiporter activity	20
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	1
GO:0046961	proton-transporting ATPase activity, rotational mechanism	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V