Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0012501
- Description
- programmed cell death
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 4 | 2 | CH_ath_9 | 16 | 22 | 3.53659e-28 |
Arabidopsis thaliana | 4 | 3 | CH_ath_10 | 16 | 22 | 3.53659e-28 |
Arabidopsis thaliana | 4 | 5 | CH_ath_8 | 16 | 22 | 3.53659e-28 |
Arabidopsis thaliana | 4 | 6 | CH_ath_8 | 16 | 22 | 3.53659e-28 |
Glycine max | Gm13 | 2 | CH_gma_35 | 18 | 69 | 0.00000000000000385886 |
Glycine max | Gm03 | 3 | CH_gma_35 | 18 | 60 | 3.81523e-16 |
Glycine max | Gm13 | 3 | CH_gma_47 | 18 | 69 | 0.00000000000000644976 |
Glycine max | Gm01 | 5 | CH_gma_79 | 18 | 278 | 0.00022093 |
Glycine max | Gm13 | 5 | CH_gma_19 | 18 | 69 | 0.00000000000000385886 |
Glycine max | Gm01 | 6 | CH_gma_105 | 18 | 278 | 0.000345637 |
Populus trichocarpa | Chr17 | 2 | CH_ptr_102 | 17 | 73 | 0.0000000000306953 |
Populus trichocarpa | Chr17 | 3 | CH_ptr_122 | 17 | 73 | 0.0000000000422911 |
Populus trichocarpa | Chr17 | 5 | CH_ptr_17 | 40 | 242 | 1.01895e-24 |
Solanum lycopersicum | ch09 | 6 | CH_sly_157 | 10 | 90 | 0.000431857 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0006915 | apoptotic process | 68 |
GO:0009626 | plant-type hypersensitive response | 18 |
GO:0010343 | singlet oxygen-mediated programmed cell death | 2 |
GO:0019050 | suppression by virus of host apoptotic process | 3 |
GO:0034050 | host programmed cell death induced by symbiont | 1 |
GO:0034052 | positive regulation of plant-type hypersensitive response | 2 |
GO:0043066 | negative regulation of apoptotic process | 9 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |