Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0010431
- Description
- seed maturation
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brassica rapa | A06 | 2 | CH_bra_194 | 3 | 5 | 0.000134825 |
Brassica rapa | A06 | 3 | CH_bra_228 | 3 | 5 | 0.000134825 |
Capsella rubella | scaffold_5 | 2 | CH_cru_43 | 6 | 10 | 0.0000000000016437 |
Capsella rubella | scaffold_5 | 3 | CH_cru_49 | 6 | 10 | 0.0000000000016437 |
Citrullus lanatus | Chr1 | 2 | CH_cla_102 | 3 | 3 | 0.00000395557 |
Citrullus lanatus | Chr1 | 3 | CH_cla_135 | 3 | 3 | 0.00000395557 |
Cucumis melo | CM3.5_scaffold00001 | 2 | CH_cme_106 | 3 | 3 | 0.00000399914 |
Cucumis melo | CM3.5_scaffold00001 | 3 | CH_cme_159 | 3 | 3 | 0.00000399914 |
Eucalyptus grandis | scaffold_10 | 2 | CH_egr_212 | 5 | 5 | 0.00000000000575007 |
Eucalyptus grandis | scaffold_10 | 3 | CH_egr_245 | 5 | 5 | 0.00000000000575007 |
Gossypium raimondii | Chr01 | 2 | CH_gra_270 | 3 | 7 | 0.000199022 |
Gossypium raimondii | Chr01 | 3 | CH_gra_326 | 3 | 7 | 0.000199022 |
Lotus japonicus | chr2 | 2 | CH_lja_89 | 3 | 5 | 0.0000460644 |
Lotus japonicus | chr2 | 3 | CH_lja_110 | 3 | 5 | 0.0000460644 |
Medicago truncatula | chr6 | 2 | CH_mtr_46 | 7 | 13 | 3.89452e-17 |
Medicago truncatula | chr6 | 3 | CH_mtr_64 | 7 | 13 | 3.89452e-17 |
Populus trichocarpa | Chr19 | 2 | CH_ptr_149 | 4 | 4 | 0.0000000116606 |
Populus trichocarpa | Chr19 | 3 | CH_ptr_192 | 4 | 4 | 0.0000000116606 |
Prunus persica | scaffold_3 | 2 | CH_ppe_77 | 5 | 6 | 0.0000000000104083 |
Prunus persica | scaffold_3 | 3 | CH_ppe_93 | 5 | 6 | 0.0000000000104083 |
Theobroma cacao | scaffold_4 | 2 | CH_tca_317 | 3 | 10 | 0.000379718 |
Theobroma cacao | scaffold_4 | 3 | CH_tca_385 | 3 | 10 | 0.000379718 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0010162 | seed dormancy process | 1 |
GO:0010231 | maintenance of seed dormancy | 6 |
GO:0048700 | acquisition of desiccation tolerance in seed | 4 |
GO:2000693 | positive regulation of seed maturation | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |